Gene omics information

Query gene ID	1620854_at
Gene name	hypothetical protein LOC100258321
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	S.X.	H.G.	Please select
0.67	87.9	1621569_at	CD801894	hypothetical protein LOC100257626	-	4e-7	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.67	87.9	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	S.X.	H.G.	Please select
0.63	84.3	1616667_a_at	CB343534	similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766	-	7e-5	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.56	79.4	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	S.X.	H.G.	Please select
0.53	75.2	1606900_at	CA816931	hypothetical protein LOC100254016	-	4e-16	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	97.8	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
4.8	97.8	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
4.6	97.6	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
4.6	97.6	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
4.5	97.5	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
4.2	97.1	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
4.2	97.1	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
3.9	96.6	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
3.8	96.4	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
3.8	96.4	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	1611142_at	CF373484	hypothetical protein LOC100245075	-	3e-1	At4g30670	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	1606594_at	CB970566	hypothetical protein LOC100250099	-	5e+0	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	1618196_at	CF608284	hypothetical LOC100248029	-	4e+0	At2g30460	-	C.G.	S.X.	Please select
0.01	2e+0	32	1617662_at	BQ794604	hypothetical protein LOC100263807	-	8e-13	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.01	2e+0	32	1617066_at	CB342254	hypothetical protein LOC100266170	-	1e-85	At2g26080	AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1616548_at	CD006761	-	-	8e-5	At3g04260	PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3)	C.G.	S.X.	Please select
0.02	2e+0	32	1615661_at	CF514085	-	-	1e-10	At2g34660	ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1615272_at	BQ797629	ripening-related protein-like	-	2e-28	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	C.G.	S.X.	Please select
0.03	2e+0	32	1613937_s_at	CF517439	similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase	-	3e-1	At3g25440	RNA binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	7e-12	71	Arabidopsis thaliana	At1g29070	839781	ribosomal protein L34 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	5e-4	46	Glycine max	Gma.11178.1.S1_at	CD395248	-	-	1e-7	At1g29070	ribosomal protein L34 family protein	C.G.	S.X.	Please select
0.05	7e-7	54	Hordeum vulgare	Contig5102_s_at	Contig5102	-	-	1e+0	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os12g0227100	9640.m01209	-	-	1e+0	At1g01130	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	5e-35	149	Populus trichocarpa	PtpAffx.147900.1.S1_s_at	AJ779369	hypothetical protein	-	1e-3	At1g56085	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	TaAffx.24167.1.S1_at	CA724184	-	-	1e+1	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.15918.1.A1_at	BG265971	-	-	1e+1	At4g29305	LCR25 (Low-molecular-weight cysteine-rich 25)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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