Gene omics information

Query gene ID	1620851_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.68	88.0	1620851_at	CF206747.1	-	-	4e-1	At2g37210	-	S.X.	H.G.	Please select
0.59	80.6	1613030_at	CF512983	-	-	1e+0	At2g45450	ZPR1 (LITTLE ZIPPER 1)	S.X.	H.G.	Please select
0.58	79.8	1607102_at	CF606606	-	-	2e+0	At3g24506	unknown protein	S.X.	H.G.	Please select
0.57	79.8	1613337_x_at	CF204544.1	-	-	3e-1	At4g28703	-	S.X.	H.G.	Please select
0.55	77.3	1612692_at	CF207590	hypothetical LOC100254134	-	4e+0	At4g24980	-	S.X.	H.G.	Please select
0.50	72.7	1620107_at	CF518921	-	-	4e+0	At1g74930	ORA47	S.X.	H.G.	Please select
0.49	69.3	1615673_at	CF215772	hypothetical protein LOC100253775	-	2e+0	At5g16650	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.47	67.7	1611555_at	CB971903	hypothetical protein LOC100267822	-	6e-1	At1g66400	calmodulin-related protein, putative	S.X.	H.G.	Please select
0.47	67.7	1612469_at	CF205528.1	hypothetical protein LOC100248700	-	3e-5	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	S.X.	H.G.	Please select
0.46	66.5	1606633_at	CD801002	-	-	2e+0	At2g42190	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	99.9	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
13.5	99.8	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
11.3	99.7	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
11.1	99.7	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
9.4	99.6	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
8.8	99.5	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
8.1	99.4	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
7.7	99.3	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
7.6	99.3	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
7.1	99.1	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	34	1621255_at	BQ795185	hypothetical protein LOC100255731	-	1e-3	At1g80100	AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)	C.G.	S.X.	Please select
0.02	2e+0	32	1620179_at	CB912064	hypothetical protein LOC100241542 /// hypothetical protein LOC100261171	-	1e-53	At4g13020	MHK	C.G.	S.X.	Please select
0.02	2e+0	32	1617335_at	CF207178	-	-	4e-1	At2g18410	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614765_at	CD003886	hypothetical protein LOC100242287	-	1e-78	At3g59870	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1614490_at	CD797504	hypothetical protein LOC100266316	-	1e-29	At5g14310	AtCXE16 (Arabidopsis thaliana carboxyesterase 16)	C.G.	S.X.	Please select
0.03	2e+0	32	1614065_at	CB914463	hypothetical protein LOC100258292	-	2e-1	At4g32340	-	C.G.	S.X.	Please select
0.03	2e+0	32	1613377_at	CB910700	hypothetical protein LOC100243326	-	4e+0	At3g09350	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1611779_at	CF568960	-	-	1e+0	At5g19800	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1611781_at	CD010979	-	-	3e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At2g37210	818298	-	Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.CL795Contig1_at	PsAffx.CL795Contig1	-	-	3e+0	At5g23160	unknown protein	C.G.	S.X.	Please select
0.05	2e-1	36	Hordeum vulgare	HB23K10r_at	HB23K10r	-	-	2e+0	At5g59360	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os03g0231000	AY554031.1	-	Hypothetical protein	8e-1	At3g19580	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.207363.1.S1_at	pmrna14606	hypothetical protein	-	2e+0	At5g17060	ATARFB1B	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	Ta.8977.1.A1_at	BQ162716	-	-	6e-1	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.823.1.S1_at	AI770503	-	-	1e-5	At3g07080	membrane protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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