CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620815_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1620815_at CF568885 - - 1e-15 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related S.X. H.G.
0.67 87.9 1608467_at CD003740 - - 8e-22 At1g17220 FUG1 (fu-gaeri1) S.X. H.G.
0.46 66.5 1610514_at AF176655.1 ripening induced protein - 2e-1 At4g33750 - S.X. H.G.
0.43 61.5 1617585_at CD005877 - - 2e-11 At3g14930 HEME1 S.X. H.G.
0.27 34.0 1618102_at CF415084 - - 7e-37 At2g18710 SCY1 (SecY Homolog 1) S.X. H.G.
0.25 30.5 1613502_at CA812857 - - 6e-6 At2g34460 flavin reductase-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.7 99.5 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
5.0 98.0 GSM147691 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 20
4.0 96.7 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19
3.8 96.4 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
3.8 96.4 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
3.5 95.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 5e-40 163 1612992_at CB343071 - - 3e-13 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.10 1e-21 101 1620024_s_at CF511252 hypothetical protein LOC100245587 - 4e-9 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.11 8e-5 46 1616114_at CF372919 hypothetical protein LOC100252324 - 4e-11 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.03 7e-2 36 1620237_at CF204229.1 - - 1e+0 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) C.G. S.X.
0.03 7e-2 36 1613621_s_at CD721086 hypothetical protein LOC100246359 - 3e-1 At5g58412 - C.G. S.X.
0.03 7e-2 36 1611021_at CD721086 - - 3e-1 At5g58412 - C.G. S.X.
0.02 3e-1 34 1612193_at CF510775 hypothetical protein LOC100257408 - 8e-53 At1g20540 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 1e+0 32 1613922_s_at CA809290 hypothetical protein LOC100249812 - 1e+0 At3g22970 unknown protein C.G. S.X.
0.03 5e+0 30 1621220_at CB919187 hypothetical protein LOC100242337 - 4e+0 At3g25719 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-15 83 Arabidopsis thaliana At1g45230 841096 defective chloroplasts and leaves protein-related / DCL protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB - - - C.G. S.X.
0.09 2e-11 69 Glycine max Gma.7276.1.S1_at CD394605 - - 2e-31 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.18 2e-9 61 Hordeum vulgare Contig15347_at Contig15347 - - 3e-2 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.15 8e-3 42 Oryza sativa Os02g0766000 AK067075.1 - DCL protein, chloroplast precursor (Defectivechloroplasts and leaves protein) 6e-7 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.22 7e-24 111 Populus trichocarpa PtpAffx.99473.1.S1_a_at CV266347 hypothetical protein - 4e-20 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.21 3e-4 46 Triticum aestivum TaAffx.98918.1.A1_at CK215441 - - 8e-5 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.03 7e+0 30 Zea mays ZmAffx.957.1.A1_at AI833524 - - 3e+0 At2g40995 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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