CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620804_at

Gene name hypothetical protein LOC100267227

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1620804_at CD797824 hypothetical protein LOC100267227 - 3e-114 At1g55360 unknown protein S.X. H.G.
0.60 81.9 1614407_at CF403465 - - 6e-2 At1g22750 unknown protein S.X. H.G.
0.60 81.9 1608586_at CF514688 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 S.X. H.G.
0.50 72.7 1609442_at CF373210 hypothetical protein LOC100243127 - 3e-4 At3g05800 transcription factor S.X. H.G.
0.40 57.7 1608829_at CD802477 hypothetical protein LOC100258592 - 9e-24 At4g03415 catalytic/ protein serine/threonine phosphatase S.X. H.G.
0.36 50.7 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 97.5 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 1619869_at CF513928 hypothetical protein LOC100263034 - 3e-1 At4g20970 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 2e-1 36 1613727_at CD797264 hypothetical protein LOC100253694 - 4e-3 At1g02750 zinc ion binding C.G. S.X.
0.01 7e-1 34 1619503_at CB345056 hypothetical protein LOC100254346 - 2e-124 At5g23120 HCF136 C.G. S.X.
0.02 7e-1 34 1618209_at CF373021 - - 3e-17 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) C.G. S.X.
0.02 3e+0 32 1622367_at CF510940 - - 2e-3 At4g37020 unknown protein C.G. S.X.
0.01 3e+0 32 1621884_at CB007990 - - 2e+0 At4g32690 GLB3 C.G. S.X.
0.02 3e+0 32 1619807_at CK138255.1 - - 8e-2 At1g13550 unknown protein C.G. S.X.
0.02 3e+0 32 1619669_at CD008410 - - 3e+0 At3g27329 - C.G. S.X.
0.01 3e+0 32 1618994_at CB834306 - - 1e-1 At5g19680 leucine-rich repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 3e-114 412 Arabidopsis thaliana At1g55360 841982 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB - - - C.G. S.X.
0.64 2e-162 573 Glycine max Gma.2172.2.S1_a_at BI426425 - - 1e-145 At1g55360 unknown protein C.G. S.X.
0.26 1e-12 73 Hordeum vulgare Contig5272_s_at Contig5272 - - 4e-1 At3g13510 unknown protein C.G. S.X.
0.16 2e-21 105 Oryza sativa Os03g0807100 CR283495 - Protein of unknown function DUF239 domaincontaining protein 2e-12 At1g55360 unknown protein C.G. S.X.
0.47 0 795 Populus trichocarpa PtpAffx.8523.1.S1_at CV239620 hypothetical protein - 9e-106 At1g55360 unknown protein C.G. S.X.
0.24 4e-8 59 Triticum aestivum Ta.7595.1.A1_at BJ261301 - - 5e-4 At3g13510 unknown protein C.G. S.X.
0.12 5e-24 111 Zea mays Zm.18312.1.S1_at CK827776 hypothetical protein LOC100279515 - 7e-17 At3g13510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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