CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620794_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 81.9 1620794_at CF568783 - - 3e-13 At4g15000 60S ribosomal protein L27 (RPL27C) S.X. H.G.
0.44 64.1 1618102_at CF415084 - - 7e-37 At2g18710 SCY1 (SecY Homolog 1) S.X. H.G.
0.27 34.0 1621017_at CD714910 - - 5e+0 At5g48530 unknown protein S.X. H.G.
0.21 24.0 1616747_at CF205411.1 - - 1e-15 At4g09012 - S.X. H.G.
0.21 24.0 1611018_at CD003886 - - 1e-78 At3g59870 unknown protein S.X. H.G.
0.02 3.2 1606673_at CB005473 hypothetical protein LOC100253524 - 1e-13 At3g10620 ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 97.6 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.9 96.6 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19
3.4 95.5 GSM147691 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 20
3.2 94.9 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
3.1 94.6 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
3.0 94.2 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
3.0 94.2 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
2.9 93.8 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
2.9 93.8 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.82 0 961 1610389_s_at CA818339 hypothetical protein LOC100261052 - 1e-13 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.83 0 884 1610244_x_at CF204556.1 hypothetical protein LOC100261052 - 1e-3 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.60 5e-86 315 1609125_at CF373253 hypothetical protein LOC100250703 - 3e-10 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.02 3e-1 34 1616243_at CB970092 hypothetical protein LOC100250252 - 1e-17 At5g55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein C.G. S.X.
0.03 1e+0 32 1610810_at CA817584 - - 1e+0 At5g27260 unknown protein C.G. S.X.
0.02 5e+0 30 1622107_at CB009545 hypothetical protein LOC100259620 - 2e-40 At5g55560 protein kinase family protein C.G. S.X.
0.02 5e+0 30 1621663_at CF211908 - - 5e-1 At4g04650 - C.G. S.X.
0.04 5e+0 30 1618434_at CF213012 hypothetical protein LOC100261603 - 6e-33 At5g41970 - C.G. S.X.
0.03 5e+0 30 1618141_at CD798593 - - 1e-15 At1g71230 CSN5B (COP9-SIGNALOSOME 5B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 3e-13 75 Arabidopsis thaliana At4g15000 827159 60S ribosomal protein L27 (RPL27C) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, intracellular;MOFP - - - C.G. S.X.
0.53 5e-25 115 Glycine max Gma.3019.1.S1_at CD391304 - - 4e-19 At3g22230 60S ribosomal protein L27 (RPL27B) C.G. S.X.
0.41 1e-38 159 Hordeum vulgare Contig2340_at Contig2340 - - 7e-12 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.31 8e-43 174 Oryza sativa Os02g0284600 AK121593.1 - 60S ribosomal protein L27 3e-11 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.18 4e-16 85 Populus trichocarpa Ptp.1424.1.S1_s_at CV250396 hypothetical protein - 3e-14 At3g22230 60S ribosomal protein L27 (RPL27B) C.G. S.X.
0.41 1e-24 113 Triticum aestivum TaAffx.42641.1.S1_at BE492356 - - 1e-6 At3g22230 60S ribosomal protein L27 (RPL27B) C.G. S.X.
0.43 1e-38 159 Zea mays Zm.16848.2.A1_at CD437503 hypothetical protein LOC100193258 - 1e-7 At3g22230 60S ribosomal protein L27 (RPL27B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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