Gene omics information

Query gene ID	1620774_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	66.5	1620774_at	CB339523	-	-	1e+0	At4g29280	LCR22 (Low-molecular-weight cysteine-rich 22)	S.X.	H.G.	Please select
0.59	80.6	1622448_at	CF404932	hypothetical protein LOC100252610	-	4e+0	At5g60670	60S ribosomal protein L12 (RPL12C)	S.X.	H.G.	Please select
0.53	75.2	1618394_at	CF371644	hypothetical protein LOC100253892	-	3e+0	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	S.X.	H.G.	Please select
0.50	72.7	1617117_at	CD715786	-	-	3e-1	At2g33796	-	S.X.	H.G.	Please select
0.47	67.7	1609275_at	CB980261	-	-	1e+0	At5g64830	programmed cell death 2 C-terminal domain-containing protein	S.X.	H.G.	Please select
0.28	37.7	1615953_at	CF606805	hypothetical protein LOC100260505	-	7e-5	At2g20490	NOP10	S.X.	H.G.	Please select
0.27	34.0	1620036_at	CF405991	hypothetical protein LOC100253221	-	4e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please select
0.19	20.9	1619765_at	CF511946	hypothetical protein LOC100256215	-	4e-1	At1g07640	OBP2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.5	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.1	96.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
4.0	96.7	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
4.0	96.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
3.9	96.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.2	94.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
3.1	94.6	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.1	94.6	GSM147714	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	43
3.1	94.6	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-3	40	1606547_at	CB977786	-	-	2e-1	At1g56555	unknown protein	C.G.	S.X.	Please select
0.05	1e-1	36	1609572_at	CF516529	-	-	1e+0	At3g48237	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622173_at	CD719685	-	-	3e-6	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	C.G.	S.X.	Please select
0.01	2e+0	32	1622249_at	CA817903	glycolate oxidase-like	-	6e-153	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1620177_at	CD718326	-	-	1e+0	At4g11100	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1618645_at	CB341965	hypothetical protein LOC100263473	-	3e+0	At4g15953	-	C.G.	S.X.	Please select
0.02	2e+0	32	1618391_at	CD719685	-	-	3e-6	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	C.G.	S.X.	Please select
0.03	2e+0	32	1616384_at	CD718326	-	-	1e+0	At4g11100	unknown protein	C.G.	S.X.	Please select
0.04	7e+0	30	1620998_at	CF207461	-	-	6e+0	At5g23200	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g29280	829049	LCR22 (Low-molecular-weight cysteine-rich 22)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	GmaAffx.84855.1.S1_at	AW459549	-	-	1e-1	At3g45180	ubiquitin family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Hordeum vulgare	Contig2666_s_at	Contig2666	-	-	3e-29	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os.10698.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.16252.1.A1_at	DN493286	-	-	1e+1	At5g22210	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.9827.1.S1_at	BJ232698	-	-	3e+0	At3g43660	nodulin, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.15724.1.S1_at	CD441358	-	-	3e+0	At2g41110	CAM2 (CALMODULIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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