Gene omics information

Query gene ID	1620765_at
Gene name	hypothetical protein LOC100266143
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	66.5	1620765_at	CF215290	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	S.X.	H.G.	Please select
0.83	94.6	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	S.X.	H.G.	Please select
0.80	93.6	1607812_at	BQ799035	hypothetical protein LOC100252911	-	1e-1	At4g34800	auxin-responsive family protein	S.X.	H.G.	Please select
0.73	90.8	1614933_at	CB003963	hypothetical protein LOC100252359	-	1e+0	At2g32450	calcium-binding EF hand family protein	S.X.	H.G.	Please select
0.53	75.2	1615577_at	CB340193	hypothetical protein LOC100256811	-	4e-92	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	S.X.	H.G.	Please select
0.50	72.7	1622512_at	CF208965	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	9e-164	575	1606720_at	CD800244	hypothetical protein LOC100253703	-	8e-111	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	C.G.	S.X.	Please select
0.24	3e-68	258	1617552_at	CF202269.1	hypothetical protein LOC100243817	-	4e-35	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.06	9e-13	73	1615962_at	CF512264	hypothetical protein LOC100256456	-	3e-22	At2g44690	ARAC9	C.G.	S.X.	Please select
0.19	3e-9	61	1608204_at	CF209964	hypothetical protein LOC100266265	-	4e-94	At4g28950	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)	C.G.	S.X.	Please select
0.04	1e-5	50	1619249_at	CF211945	-	-	5e-6	At2g17800	ARAC1	C.G.	S.X.	Please select
0.02	1e-2	40	1617354_at	CA816074	hypothetical protein LOC100263639	-	6e-121	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.02	5e-2	38	1620315_at	CF604880	-	-	3e-6	At2g36480	zinc finger (C2H2-type) family protein	C.G.	S.X.	Please select
0.02	5e-2	38	1608365_at	CF205987.1	hypothetical protein LOC100265818	-	4e-4	At3g52400	SYP122 (SYNTAXIN OF PLANTS 122)	C.G.	S.X.	Please select
0.02	5e-2	38	1607696_at	CB009443	-	-	3e-6	At2g36480	zinc finger (C2H2-type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	2e-124	446	Arabidopsis thaliana	At1g20090	838598	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	1e-117	424	Glycine max	GmaAffx.92012.1.S1_at	CF807737	-	-	4e-81	At1g75840	ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5)	C.G.	S.X.	Please select
0.27	3e-44	178	Hordeum vulgare	Contig9160_s_at	Contig9160	-	-	1e-41	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.37	2e-92	341	Oryza sativa	Os02g0834000	AF218381.1	-	Rop4 small GTP binding protein	1e-72	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	1e-138	494	Populus trichocarpa	Ptp.4437.1.S1_s_at	CF228346	hypothetical protein	-	1e-103	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	6e-32	139	Triticum aestivum	Ta.10240.1.S1_at	CD454934	-	-	4e-42	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select
0.35	1e-58	226	Zea mays	Zm.449.1.S1_at	AF126055.1	Rho-related protein from plants 4	-	6e-81	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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