Gene omics information

Query gene ID	1620764_a_at
Gene name	hypothetical protein LOC100261589
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1620764_a_at	CB348714	hypothetical protein LOC100261589	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.67	87.9	1615260_at	CF372907	similar to FAD-binding domain-containing protein	-	4e-4	At1g32310	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1618385_at	CF518525	hypothetical protein LOC100246711	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.47	67.7	1610944_at	BQ794641	hypothetical protein LOC100261610	-	1e-103	At5g21274	CAM6 (CALMODULIN 6)	S.X.	H.G.	Please select
0.44	64.1	1612979_at	CF208013	hypothetical protein LOC100243586	-	3e-61	At2g21260	mannose 6-phosphate reductase (NADPH-dependent), putative	S.X.	H.G.	Please select
0.40	57.7	1615356_at	CF403414	hypothetical protein LOC100267033	-	3e-5	At3g53310	transcriptional factor B3 family protein	S.X.	H.G.	Please select
0.40	57.7	1617139_s_at	CF202008.1	hypothetical protein LOC100246711	-	7e+0	At5g37580	-	S.X.	H.G.	Please select
0.40	57.7	1612829_at	BQ797707	hypothetical protein LOC100247114	-	2e-93	At4g34720	AVA-P1	S.X.	H.G.	Please select
0.38	53.6	1622387_s_at	CF514535	hypothetical protein LOC100245490	-	1e-28	At5g47570	unknown protein	S.X.	H.G.	Please select
0.33	45.7	1608749_at	CB980219	hypothetical protein LOC100241808	-	5e-10	At1g21170	SEC5B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.0	88.2	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
1.9	87.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
1.9	87.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	1310	1618385_at	CF518525	hypothetical protein LOC100246711	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.61	0	1168	1616420_at	CF515326	hypothetical protein LOC100244821	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.45	2e-175	615	1615105_s_at	CF568901	hypothetical protein LOC100256979	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.01	3e-1	36	1621437_at	CF369119	-	-	4e-65	At4g02930	elongation factor Tu, putative / EF-Tu, putative	C.G.	S.X.	Please select
0.01	3e-1	36	1617679_at	CF606638	hypothetical protein LOC100264890	-	4e-65	At4g02930	elongation factor Tu, putative / EF-Tu, putative	C.G.	S.X.	Please select
0.01	1e+0	34	1618152_at	CB008600	-	-	3e-24	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select
0.07	1e+0	34	1617339_at	CF207748	-	-	1e+0	At4g09760	choline kinase, putative	C.G.	S.X.	Please select
0.07	1e+0	34	1615648_at	CA809557	-	-	6e-2	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.01	1e+0	34	1614375_at	CB008600	hypothetical protein LOC100260480	-	3e-24	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	1126	Arabidopsis thaliana	At1g07920	837307	elongation factor 1-alpha / EF-1-alpha	F:calmodulin binding, translation elongation factor activity;P:response to cadmium ion;C:mitochondrion, nucleolus, plasma membrane, chloroplast, membrane;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.66	0	1273	Glycine max	Gma.17616.1.S1_at	AW568275	-	-	0	At5g60390	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.61	0	1080	Hordeum vulgare	Contig397_x_at	Contig397	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.62	0	880	Oryza sativa	Os03g0177400	AK103738.1	-	EF-1 alpha	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.64	0	888	Populus trichocarpa	PtpAffx.291.1.A1_x_at	CV271058	hypothetical protein	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	0	916	Triticum aestivum	Ta.659.6.S1_x_at	BJ282457	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.64	0	1106	Zea mays	Zm.3157.3.A1_at	CK347593	elongation factor 1-alpha	-	0	At1g07930	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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