CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620741_at

Gene name hypothetical protein LOC100243299

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1620741_at CB972037 hypothetical protein LOC100243299 - 2e-2 At5g58270 STA1 (STARIK 1) S.X. H.G.
0.83 94.6 1613227_at CB912270 hypothetical protein LOC100247606 - 3e+0 At5g62575 unknown protein S.X. H.G.
0.80 93.6 1609314_at CF212696 hypothetical protein LOC100266108 - 4e+0 At3g04970 zinc finger (DHHC type) family protein S.X. H.G.
0.44 64.1 1622397_at CF515693 - - 7e-2 At2g39970 peroxisomal membrane protein (PMP36) S.X. H.G.
0.43 61.5 1618873_at CB980637 hypothetical protein LOC100264953 - 1e+0 At3g05685 - S.X. H.G.
0.35 48.5 1617652_s_at CF517834 hypothetical protein LOC100249964 - 3e-2 At3g63310 glutamate binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 97.2 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
4.1 96.9 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.9 96.6 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.9 96.6 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
3.7 96.2 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
3.7 96.2 GSM147731 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 60
3.6 96.0 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
3.5 95.7 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
3.5 95.7 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41
3.3 95.2 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 34 1619357_at CB972316 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-71 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.03 3e-1 34 1611211_at CF603196 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase - 3e-10 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.03 3e-1 34 1609718_at CF608771 - - 1e+0 At5g50915 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 1e+0 32 1615440_at CF210450 hypothetical protein LOC100257857 - 9e-5 At5g49945 unknown protein C.G. S.X.
0.02 1e+0 32 1606505_at CB970568 hypothetical protein LOC100257948 - 3e+0 At3g21570 unknown protein C.G. S.X.
0.02 5e+0 30 1622722_at CF209124 - - 4e-1 At4g30067 LCR63 (Low-molecular-weight cysteine-rich 63) C.G. S.X.
0.01 5e+0 30 1622575_s_at CF512405 hypothetical protein LOC100245923 - 2e-44 At3g06483 PDK (PYRUVATE DEHYDROGENASE KINASE) C.G. S.X.
0.02 5e+0 30 1619345_s_at BM436862 hypothetical protein LOC100262861 - 1e-4 At3g01500 CA1 (CARBONIC ANHYDRASE 1) C.G. S.X.
0.02 5e+0 30 1619106_at CA809301 - - 4e-23 At3g26618 ERF1-3 (eukaryotic release factor 1-3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 40 Arabidopsis thaliana At5g58270 835939 STA1 (STARIK 1) Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily. Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance. - - - C.G. S.X.
0.16 3e-23 109 Glycine max GmaAffx.68171.1.S1_at BG650590 - - 3e-8 At5g58270 STA1 (STARIK 1) C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig26121_at Contig26121 - - 1e+0 At5g49710 unknown protein C.G. S.X.
0.05 9e-12 71 Oryza sativa Os06g0128300 AK072699.1 - Mitochondrial half-ABC transporter 1e-19 At5g58270 STA1 (STARIK 1) C.G. S.X.
0.13 4e-16 85 Populus trichocarpa PtpAffx.94926.1.A1_at CV266356 ABC transporter family of the mitochondria family - 6e-22 At5g58270 STA1 (STARIK 1) C.G. S.X.
0.05 1e+0 34 Triticum aestivum Ta.3453.1.S1_at BJ211887 - - 2e+0 At3g01830 calmodulin-related protein, putative C.G. S.X.
0.03 7e+0 30 Zea mays Zm.5789.13.A1_a_at AI670670 hypothetical protein LOC100192516 - 8e-7 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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