CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620725_at

Gene name hypothetical protein LOC100249240

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620725_at BQ795649 hypothetical protein LOC100249240 - 4e-1 At4g37445 - S.X. H.G.
0.63 84.3 1618716_at CB917669 similar to Os06g0665100 - 1e-22 At5g44730 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.59 80.6 1609762_s_at CD712929 hypothetical protein LOC100257013 - 4e-19 At1g16270 protein kinase family protein S.X. H.G.
0.59 80.6 1617361_at CF404356 hypothetical protein LOC100244017 - 3e-50 At4g35630 PSAT S.X. H.G.
0.56 79.4 1611013_at CF518927 hypothetical protein LOC100243798 - 4e-1 At5g22890 zinc finger (C2H2 type) family protein S.X. H.G.
0.47 67.7 1607804_at CB004035 - - 2e-45 At1g16270 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.1 99.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.5 99.9 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.6 99.9 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.6 99.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
12.2 99.8 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
12.2 99.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.2 99.7 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.0 99.7 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.1 99.6 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.5 99.6 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 34 1606831_at CA818428 hypothetical protein LOC100260960 - 2e-112 At5g61790 calnexin 1 (CNX1) C.G. S.X.
0.02 2e+0 32 1622406_at CB343386 similar to LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); dihydrolipoyllysine-residue acetyltransferase - 5e-47 At3g25860 LTA2 C.G. S.X.
0.01 2e+0 32 1620222_x_at AJ237984.1 proline-rich cell wall protein-like /// ripening-induced protein 1-like - 6e-1 Atcg00360 - C.G. S.X.
0.00 2e+0 32 1620102_at CF514700 - - 0 Atcg00540 - C.G. S.X.
0.02 2e+0 32 1619759_at CA814682 hypothetical protein LOC100253701 - 5e-29 At2g41530 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) C.G. S.X.
0.01 2e+0 32 1615067_s_at AJ237984.1 proline-rich cell wall protein-like /// ripening-induced protein 1-like - 6e-1 Atcg00360 - C.G. S.X.
0.00 2e+0 32 1615099_s_at CB970583 hypothetical protein LOC100242764 /// similar to cytochrome f - 0 Atcg00540 - C.G. S.X.
0.00 2e+0 32 1612526_s_at CF514700 - - 0 Atcg00540 - C.G. S.X.
0.00 2e+0 32 1612624_at CB974055 similar to Os06g0598500 - 0 Atcg00540 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At4g37445 829899 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e-1 38 Glycine max Gma.12520.1.S1_at CD394537 - - 2e+0 At4g00030 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig18225_at Contig18225 - - 6e+0 Atcg00790 - C.G. S.X.
0.02 3e+0 34 Oryza sativa Os02g0769100 AK107987.1 - Auxin responsive SAUR protein family protein 4e-1 At5g25490 zinc finger (Ran-binding) family protein C.G. S.X.
0.05 4e-2 40 Populus trichocarpa PtpAffx.14710.3.A1_at CV241578 hypothetical protein - 3e-1 At5g51880 iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.11934.1.A1_at BQ171095 - - 1e+0 At2g27750 nucleolar matrix protein-related C.G. S.X.
0.03 7e-1 34 Zea mays Zm.6293.1.A1_at CF038760 hypothetical protein LOC100216905 - 4e+0 At5g08400 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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