Gene omics information

Query gene ID	1620717_at
Gene name	hypothetical protein LOC100255378
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1620717_at	BQ799683	hypothetical protein LOC100255378	-	3e-15	At5g58430	ATEXO70B1 (exocyst subunit EXO70 family protein B1)	S.X.	H.G.	Please select
0.43	61.5	1616171_at	BM437490	hypothetical protein LOC100251471	-	3e-18	At5g48380	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select
0.40	57.7	1611619_at	CB968961	similar to putative GTPase activating protein	-	4e-3	At3g07940	zinc finger and C2 domain protein, putative	S.X.	H.G.	Please select
0.36	50.7	1614588_s_at	CF406014	hypothetical protein LOC100253521	-	8e-2	At3g12100	cation efflux family protein / metal tolerance protein, putative	S.X.	H.G.	Please select
0.27	34.0	1611250_at	CB922487	hypothetical protein LOC100249628	-	9e-4	At4g24100	protein kinase family protein	S.X.	H.G.	Please select
0.12	12.1	1612309_at	CB342376	hypothetical protein LOC100245361 /// hypothetical protein LOC100263480	-	7e-2	At2g37195	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	97.6	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	1619484_at	CA814697	hypothetical protein LOC100245801	-	3e-4	At5g21482	CKX7 (CYTOKININ OXIDASE 7)	C.G.	S.X.	Please select
0.02	7e-1	34	1617631_at	CD798963	hypothetical protein LOC100264042	-	8e-9	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1615645_at	CB969433	hypothetical protein LOC100257930	-	1e+0	At2g42350	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1611756_at	CB972184	-	-	2e+0	At4g31790	diphthine synthase, putative (DPH5)	C.G.	S.X.	Please select
0.02	7e-1	34	1610019_at	CF209628	hypothetical protein LOC100250847	-	2e-1	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	C.G.	S.X.	Please select
0.02	7e-1	34	1608313_at	CF209144	hypothetical LOC100243224 /// hypothetical protein LOC100247929 /// hypothetical LOC100248511 /// hypothetical protein LOC100262089 /// hypothetical LOC100262672	-	6e-16	At5g64570	XYL4	C.G.	S.X.	Please select
0.02	3e+0	32	1620733_at	CB975258	hypothetical protein LOC100251615 /// hypothetical protein LOC100256870	-	1e+0	At5g65480	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620618_at	BQ794587	hypothetical protein LOC100263626	-	1e-5	At4g26790	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	1619913_at	BQ792292	hypothetical protein LOC100241244 /// hypothetical protein LOC100263338	-	2e-1	At5g47530	auxin-responsive protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-15	83	Arabidopsis thaliana	At5g58430	835956	ATEXO70B1 (exocyst subunit EXO70 family protein B1)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	3e-16	87	Glycine max	Gma.9061.1.S1_at	CA819289	-	-	4e-1	At1g23724	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	HB06O06r_at	HB06O06r	-	-	1e+1	At5g40382	cytochrome-c oxidase	C.G.	S.X.	Please select
0.02	7e-2	40	Oryza sativa	Os05g0473500	AK101630.1	-	Exo70 exocyst complex subunit family protein	5e+0	At2g48130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	9e-7	56	Populus trichocarpa	Ptp.5970.1.S1_at	CA821913	hypothetical protein	-	9e-2	At1g50040	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	34	Triticum aestivum	TaAffx.114030.1.S1_at	CA599853	-	-	1e+0	At1g67540	unknown protein	C.G.	S.X.	Please select
0.04	4e-6	52	Zea mays	Zm.5567.1.A1_at	BE552517	Histone H2B.2	-	6e-1	At1g07000	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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