CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620709_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620709_at CB918852 - - 1e-65 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) S.X. H.G.
0.31 41.3 1609452_at BQ794280 hypothetical protein LOC100249768 - 3e-1 At4g31460 ribosomal protein L28 family protein S.X. H.G.
0.22 25.6 1609388_at CF568898 - - 2e-2 At1g32400 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) S.X. H.G.
0.10 10.3 1619013_at CF514808 hypothetical protein LOC100242671 - 3e-32 At1g03260 - S.X. H.G.
0.08 8.5 1621155_at BQ794745 hypothetical protein LOC100248478 - 8e-34 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) S.X. H.G.
0.05 6.0 1618348_at CF373264 hypothetical protein LOC100265921 - 1e-47 At5g45750 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 98.2 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436404 V. riparia (VR, PI588259) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 817 1616939_at CB918852 hypothetical protein LOC100260245 - 1e-65 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.01 4e-1 34 1621002_at CF208524 hypothetical protein LOC100254244 - 6e-101 At2g24520 AHA5 (Arabidopsis H(+)-ATPase 5) C.G. S.X.
0.02 4e-1 34 1611764_at CF511297 hypothetical protein LOC100254115 - 1e-1 At3g01220 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) C.G. S.X.
0.01 6e+0 30 1619744_at CF208885 hypothetical protein LOC100249117 - 2e-94 At1g18070 EF-1-alpha-related GTP-binding protein, putative C.G. S.X.
0.03 6e+0 30 1618795_at CF518882 - - 3e+0 At4g16447 unknown protein C.G. S.X.
0.03 6e+0 30 1614433_at CD718588 - - 2e+0 At5g34869 unknown protein C.G. S.X.
0.02 6e+0 30 1614371_at BQ793074 - - 1e+0 At3g01327 - C.G. S.X.
0.03 6e+0 30 1610651_at CF518354 - - 2e+0 At5g34869 unknown protein C.G. S.X.
0.02 6e+0 30 1610337_at CB981160 hypothetical protein LOC100246622 - 5e-7 At4g16070 lipase class 3 family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 1e-65 250 Arabidopsis thaliana At5g12370 831112 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOB - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.55926.1.S1_at BQ612241 - - 2e+0 At4g14560 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) C.G. S.X.
0.14 8e-16 83 Hordeum vulgare Contig6653_at Contig6653 - - 2e-17 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.12 6e-23 109 Oryza sativa Os12g0238100 AK064983.1 - Exocyst complex component Sec10 family protein 6e-40 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.65 1e-81 303 Populus trichocarpa PtpAffx.8033.3.S1_a_at CV233684 hypothetical protein - 3e-57 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.21 4e-13 75 Triticum aestivum Ta.3597.1.S1_at BQ166709 - - 1e-6 At5g12370 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) C.G. S.X.
0.02 9e+0 30 Zea mays Zm.7908.1.A1_at BM080382 - - 1e+0 At3g10020 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage