CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620684_at

Gene name hypothetical protein LOC100244408

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620684_at CA811105 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein S.X. H.G.
0.67 87.9 1617061_s_at CD003896 hypothetical protein LOC100243475 - 2e-15 At5g55220 trigger factor type chaperone family protein S.X. H.G.
0.60 81.9 1622495_at BM436258 hypothetical protein LOC100248841 - 4e-26 At1g74970 RPS9 (RIBOSOMAL PROTEIN S9) S.X. H.G.
0.53 75.2 1615609_at CB971917 hypothetical protein LOC100268043 - 1e-11 At3g25920 RPL15 S.X. H.G.
0.50 72.7 1607466_at CF413978 similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome - 2e-17 At1g05190 emb2394 (embryo defective 2394) S.X. H.G.
0.50 72.7 1610716_at CF211147 hypothetical protein LOC100265925 - 5e-16 At3g15190 chloroplast 30S ribosomal protein S20, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 99.0 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
5.1 98.1 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
4.8 97.8 GSM147714 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 43
4.7 97.7 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
4.7 97.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
4.6 97.6 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
4.2 97.1 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41
4.0 96.7 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
3.9 96.6 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.9 96.6 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 36 1620787_s_at BM438036 hypothetical protein LOC100263709 - 6e-40 At5g35680 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative C.G. S.X.
0.02 1e-1 36 1618725_at CD797755 hypothetical protein LOC100265933 - 7e-4 At5g54540 - C.G. S.X.
0.02 5e-1 34 1621943_at CB344051 hypothetical protein LOC100245848 - 3e-8 At3g17930 unknown protein C.G. S.X.
0.02 5e-1 34 1617331_at CB348070 hypothetical protein LOC100242353 - 2e-12 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.02 5e-1 34 1614211_at CA818276 - - 1e-7 At2g45560 CYP76C1 C.G. S.X.
0.02 5e-1 34 1610415_at CA816043 hypothetical protein LOC100243672 - 1e-7 At2g45560 CYP76C1 C.G. S.X.
0.02 2e+0 32 1621568_at CF415414 hypothetical protein LOC100252433 - 1e+0 At2g07721 unknown protein C.G. S.X.
0.02 2e+0 32 1617910_at CF215683 hypothetical protein LOC100265284 - 5e-7 At1g17260 AHA10 (Autoinhibited H(+)-ATPase isoform 10) C.G. S.X.
0.02 2e+0 32 1617902_at CB976191 - - 5e-9 At2g01690 binding C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 5e-10 65 Arabidopsis thaliana At1g64510 842759 ribosomal protein S6 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOP - - - C.G. S.X.
0.25 9e-40 165 Glycine max Gma.10595.1.S1_at CD414051 - - 2e-40 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.16 4e-15 81 Hordeum vulgare Contig8956_at Contig8956 - - 7e-3 At1g64900 CYP89A2 (CYTOCHROME P450 89A2) C.G. S.X.
0.15 6e-8 59 Oryza sativa Os03g0843400 AK061198.1 - 30S ribosomal protein S6, chloroplast precursor(Fragment) 3e-2 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.30 1e-57 224 Populus trichocarpa Ptp.5722.1.S1_at CV226697 hypothetical protein - 2e-15 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.21 8e-12 71 Triticum aestivum Ta.13366.3.S1_x_at CA618035 - - 9e-1 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.810.1.A1_at AI770396 - - 2e-1 At3g01880 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage