CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620654_at

Gene name hypothetical protein LOC100262551

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1620654_at CF514699 hypothetical protein LOC100262551 - 1e-64 At3g60750 transketolase, putative S.X. H.G.
0.67 87.9 1607837_at CB973483 hypothetical protein LOC100243647 - 4e+0 At3g62530 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.60 81.9 1621126_at CF510926 hypothetical protein LOC100252389 - 4e+0 At2g35420 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.55 77.3 1619655_at CF604767 hypothetical protein LOC100252634 - 4e-1 At3g09480 histone H2B, putative S.X. H.G.
0.50 72.7 1608313_at CF209144 hypothetical LOC100243224 /// hypothetical protein LOC100247929 /// hypothetical LOC100248511 /// hypothetical protein LOC100262089 /// hypothetical LOC100262672 - 6e-16 At5g64570 XYL4 S.X. H.G.
0.26 32.0 1607426_at AF159124.1 beta-galactosidase - 9e-26 At4g36360 BGAL3 (beta-galactosidase 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 98.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.8 97.8 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436374 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.95 0 3209 1618061_a_at CF514699 hypothetical protein LOC100262607 - 1e-64 At3g60750 transketolase, putative C.G. S.X.
0.32 9e-131 466 1613595_at BQ799166 hypothetical protein LOC100248004 - 5e-139 At2g45290 transketolase, putative C.G. S.X.
0.12 4e-90 331 1617748_a_at CD801712 hypothetical protein LOC100262607 - 6e-3 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) C.G. S.X.
0.12 4e-90 331 1609568_at CD801712 hypothetical protein LOC100262607 - 6e-3 At4g37980 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) C.G. S.X.
0.02 3e-1 36 1622503_at CF203022.1 - - 9e-8 At4g37990 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) C.G. S.X.
0.02 3e-1 36 1620650_s_at CF207485 hypothetical protein LOC100255907 - 7e-5 At4g37990 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) C.G. S.X.
0.02 3e-1 36 1619937_s_at CB973939 hypothetical protein LOC100248009 - 2e+0 At5g28610 - C.G. S.X.
0.02 3e-1 36 1619725_at CF201528.1 - - 6e+0 Atmg01060 - C.G. S.X.
0.02 3e-1 36 1613900_at BQ792601 hypothetical protein LOC100247559 - 9e-16 At4g37990 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 1e-64 248 Arabidopsis thaliana At3g60750 825246 transketolase, putative F:catalytic activity, transketolase activity;P:response to cadmium ion, response to salt stress;C:chloroplast stroma, chloroplast, chloroplast envelope;OBMFAP - - - C.G. S.X.
0.33 4e-44 180 Glycine max GmaAffx.90932.1.A1_at CF806842 - - 8e-37 At2g45290 transketolase, putative C.G. S.X.
0.21 1e-44 180 Hordeum vulgare Contig1618_at Contig1618 - - 1e-64 At3g60750 transketolase, putative C.G. S.X.
0.14 4e-63 244 Oryza sativa Os06g0133800 AK105053.1 - The start codon is not identified. 1e-49 At2g45290 transketolase, putative C.G. S.X.
0.38 4e-155 549 Populus trichocarpa PtpAffx.579.2.S1_s_at CN523611 hypothetical protein - 0 At2g45290 transketolase, putative C.G. S.X.
0.10 2e-20 101 Triticum aestivum TaAffx.58684.1.S1_at CA617323 - - 6e-27 At3g60750 transketolase, putative C.G. S.X.
0.14 1e-41 171 Zea mays Zm.1422.1.A1_at CA402968 hypothetical protein LOC100279513 - 1e-59 At2g45290 transketolase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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