Gene omics information

Query gene ID	1620648_at
Gene name	hypothetical protein LOC100256959
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1620648_at	CD008794	hypothetical protein LOC100256959	-	1e+0	At4g27380	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1612962_at	BQ794726	-	-	2e-2	At5g35530	40S ribosomal protein S3 (RPS3C)	S.X.	H.G.	Please select
0.53	75.2	1619680_at	CB975224	hypothetical protein LOC100254201	-	2e+0	At3g14480	glycine/proline-rich protein	S.X.	H.G.	Please select
0.50	72.7	1612660_at	CB980017	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	S.X.	H.G.	Please select
0.40	57.7	1609735_at	CF372575	hypothetical protein LOC100249713	-	1e-75	At1g50030	TOR (TARGET OF RAPAMYCIN)	S.X.	H.G.	Please select
0.36	50.7	1611458_at	CF207715	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	S.X.	H.G.	Please select
0.27	34.0	1619784_at	CF209299	hypothetical protein LOC100248174	-	2e-9	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	S.X.	H.G.	Please select
0.26	32.0	1622061_at	CD798716	hypothetical protein LOC100264484	-	3e-10	At1g59820	ALA3 (Aminophospholipid ATPase3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	93.8	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.3	90.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	872	1608053_at	CD008794	-	-	1e+0	At4g27380	unknown protein	C.G.	S.X.	Please select
0.03	5e-3	40	1619816_at	CA817914	hypothetical protein LOC100250681	-	2e-11	At1g75350	emb2184 (embryo defective 2184)	C.G.	S.X.	Please select
0.03	3e-1	34	1618670_at	BQ798857	hypothetical protein LOC100264831	-	2e-14	At5g27560	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	1617478_at	BQ792138	-	-	3e+0	At4g09467	-	C.G.	S.X.	Please select
0.01	1e+0	32	1621843_at	CB349223	hypothetical protein LOC100266185	-	3e-19	At4g01560	MEE49 (maternal effect embryo arrest 49)	C.G.	S.X.	Please select
0.03	1e+0	32	1619924_at	CB974128	-	-	1e-3	At1g56423	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1618397_at	BQ792646	hypothetical protein LOC100262580	-	1e-56	At3g51130	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1616855_at	CD003909	-	-	9e-15	At5g24010	protein kinase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1616393_at	CF603222	-	-	1e+0	At3g02875	ILR1 (IAA-LEUCINE RESISTANT 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g27380	828846	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	GmaAffx.676.1.A1_at	BE659659	-	-	7e-1	At2g21655	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	HA03O20u_at	HA03O20u	-	-	2e+0	At2g38790	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	36	Oryza sativa	Os03g0309800	AK106141.1	-	PPR2	4e-15	At3g06430	EMB2750 (embryo defective 2750)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.158812.1.S1_s_at	CX182269	hypothetical protein	-	4e-1	At3g06520	agenet domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.3984.3.S1_x_at	BJ224370	-	-	1e+0	At4g33660	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.8568.1.S1_at	BM267065	-	-	2e+0	At1g06790	RNA polymerase Rpb7 N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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