CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620627_at

Gene name hypothetical protein LOC100259195

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1620627_at CF214379 hypothetical protein LOC100259195 - 1e-22 At1g20110 zinc finger (FYVE type) family protein S.X. H.G.
0.80 93.6 AFFX-Vvi-actin-5_at - actin 1 - 0 S.X. H.G.
0.73 90.8 1616733_s_at CB981317 hypothetical protein LOC100255975 - 1e-3 At5g56610 dual specificity protein phosphatase family protein S.X. H.G.
0.73 90.8 1614946_at CF510992 hypothetical protein LOC100258219 - 8e-64 At4g24820 26S proteasome regulatory subunit, putative (RPN7) S.X. H.G.
0.73 90.8 1614631_at CB979660 hypothetical protein LOC100254376 - 1e-137 At5g19990 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) S.X. H.G.
0.67 87.9 1617936_at BQ797736 similar to 26S proteasome subunit RPN5b - 3e-23 At5g64760 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 95.2 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 38 1612622_at BQ793555 hypothetical protein LOC100244545 - 4e+0 At5g27170 unknown protein C.G. S.X.
0.02 1e+0 32 1621760_at BQ794397 hypothetical protein LOC100241392 - 1e-8 At1g50640 ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3) C.G. S.X.
0.03 1e+0 32 1619737_at BQ799058 hypothetical protein LOC100252379 - 4e+0 At5g05670 signal recognition particle binding C.G. S.X.
0.03 1e+0 32 1612037_s_at CF511447 hypothetical protein LOC100256715 - 5e+0 At5g04830 unknown protein C.G. S.X.
0.03 1e+0 32 1609383_at CF511447 hypothetical protein LOC100256715 - 5e+0 At5g04830 unknown protein C.G. S.X.
0.03 1e+0 32 1608277_at CA816391 hypothetical protein LOC100249980 - 3e-75 At4g12230 esterase/lipase/thioesterase family protein C.G. S.X.
0.02 6e+0 30 1622111_at CB970952 hypothetical protein LOC100242512 - 1e-3 At3g04470 - C.G. S.X.
0.02 6e+0 30 1621655_at CA817336 hypothetical protein LOC100243738 - 3e-2 At5g51670 unknown protein C.G. S.X.
0.03 6e+0 30 1619141_at CD801026 - - 2e-1 At5g42655 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 1e-22 107 Arabidopsis thaliana At1g20110 838600 zinc finger (FYVE type) family protein F:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVA - - - C.G. S.X.
0.26 1e-32 141 Glycine max Gma.1997.1.S1_at AW309713 - - 5e-26 At1g20110 zinc finger (FYVE type) family protein C.G. S.X.
0.17 3e-12 71 Hordeum vulgare Contig8296_at Contig8296 - - 2e-4 At1g20110 zinc finger (FYVE type) family protein C.G. S.X.
0.09 1e-11 71 Oryza sativa Os06g0724100 AK066985.1 - Zn-finger, FYVE type domain containing protein 1e-3 At1g20110 zinc finger (FYVE type) family protein C.G. S.X.
0.32 7e-43 174 Populus trichocarpa Ptp.7476.1.A1_s_at CK111860 hypothetical protein - 4e-42 At1g20110 zinc finger (FYVE type) family protein C.G. S.X.
0.14 6e-12 71 Triticum aestivum Ta.7853.1.S1_at BQ160800 - - 2e-4 At1g20110 zinc finger (FYVE type) family protein C.G. S.X.
0.22 6e-16 83 Zea mays Zm.17921.1.A1_at CO526378 hypothetical protein LOC100273158 - 1e-8 At1g20110 zinc finger (FYVE type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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