CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620623_at

Gene name hypothetical protein LOC100249108

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620623_at CF215757 hypothetical protein LOC100249108 - 4e-1 At5g25090 plastocyanin-like domain-containing protein S.X. H.G.
0.73 90.8 1620834_at CB970590 hypothetical protein LOC100253371 - 4e-1 At5g02520 - S.X. H.G.
0.67 87.9 1616463_at CF208407 hypothetical protein LOC100249922 - 4e-47 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) S.X. H.G.
0.53 75.2 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein S.X. H.G.
0.53 75.2 1620936_at CF213485 hypothetical protein LOC100260333 - 2e-2 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.44 64.1 1615089_at CF512548 hypothetical protein LOC100260443 - 1e-140 At2g29550 TUB7 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.3 99.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
12.3 99.8 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
7.6 99.3 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.6 98.4 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.6 98.4 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.1 98.1 GSM436353 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.0 98.0 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM436394 V. riparia (VR, PI588259) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.2 97.1 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 34 1622246_at CF212159 - - 2e-1 At4g34800 auxin-responsive family protein C.G. S.X.
0.02 5e-1 34 1614770_at CB006106 - - 6e+0 At5g03310 auxin-responsive family protein C.G. S.X.
0.02 5e-1 34 1611024_at CB006106 - - 6e+0 At5g03310 auxin-responsive family protein C.G. S.X.
0.04 5e-1 34 1608080_at CF510891 hypothetical protein LOC100263503 - 2e-32 At5g26210 AL4 (ALFIN-LIKE 4) C.G. S.X.
0.01 2e+0 32 1621190_at CB341294 - - 0 Atcg01280 - C.G. S.X.
0.02 2e+0 32 1616979_s_at CD711896 hypothetical protein LOC100262599 - 1e-63 At1g75440 UBC16 (ubiquitin-conjugating enzyme 16) C.G. S.X.
0.02 2e+0 32 1616148_at BQ800532 hypothetical protein LOC100255531 - 1e+0 At1g58480 - C.G. S.X.
0.03 7e+0 30 1621651_at CB345580 - - 1e+0 At4g01310 ribosomal protein L5 family protein C.G. S.X.
0.01 7e+0 30 1620802_at CB976446 similar to putative pyruvate dehydrogenase E1 alpha subunit - 3e-89 At1g01090 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-1 36 Arabidopsis thaliana At5g25090 832580 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P - - - C.G. S.X.
0.13 6e-4 46 Glycine max Gma.16501.1.S1_at AW309491 - - 1e-1 At4g31840 plastocyanin-like domain-containing protein C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HF22G17r_at HF22G17r - - 7e+0 At4g30097 unknown protein C.G. S.X.
0.02 8e-1 36 Oryza sativa Os09g0382200 AK063210.1 - - 1e+0 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) C.G. S.X.
0.22 6e-7 56 Populus trichocarpa Ptp.6641.1.S1_s_at CV253874 hypothetical protein - 1e-7 At2g25060 plastocyanin-like domain-containing protein C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.12659.2.S1_a_at CA657703 - - 4e+0 At5g28640 AN3 (ANGUSTIFOLIA 3) C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.808.1.A1_at AI770390 - - 8e-4 At2g40070 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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