CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620607_s_at

Gene name hypothetical protein LOC100259713

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620607_s_at CB910956 hypothetical protein LOC100259713 - 1e-1 At2g47890 zinc finger (B-box type) family protein S.X. H.G.
0.25 30.5 1614767_at CF213285 hypothetical protein LOC100255092 - 1e+0 At3g45443 unknown protein S.X. H.G.
0.10 10.3 1607085_at CF515982 hypothetical protein LOC100263760 - 2e-10 At2g38560 TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) S.X. H.G.
0.09 9.4 1614536_at CF214118 hypothetical protein LOC100256194 - 1e-8 At1g04340 lesion inducing protein-related S.X. H.G.
0.08 8.5 1607562_at CB339916 hypothetical protein LOC100260435 - 7e-6 At4g37660 ribosomal protein L12 family protein S.X. H.G.
0.06 6.8 1616565_at CF513795 hypothetical protein LOC100257131 - 5e-72 At3g57610 ADSS (ADENYLOSUCCINATE SYNTHASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 98.2 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
4.4 97.3 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3 97.2 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
4.2 97.1 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.8 96.4 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8 96.4 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.8 96.4 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
3.6 96.0 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4 95.5 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.80 0 1209 1607014_at CF202623.1 - - 2e-3 At2g47890 zinc finger (B-box type) family protein C.G. S.X.
0.03 3e-2 38 1620367_at CF415391 hypothetical protein LOC100243368 - 7e-8 At4g23740 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 5e-1 34 1609026_at CF403174 - - 1e+0 At3g54480 SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5) C.G. S.X.
0.02 2e+0 32 1622180_at CF200935.1 - - 2e-24 At4g18040 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) C.G. S.X.
0.02 2e+0 32 1622063_s_at CA814656 hypothetical protein LOC100262414 - 3e-27 At4g18040 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) C.G. S.X.
0.02 2e+0 32 1620546_at CF604129 similar to T5E21.11 - 5e-46 At1g14610 TWN2 (TWIN 2) C.G. S.X.
0.02 2e+0 32 1620016_at CA814656 hypothetical protein LOC100262414 - 3e-27 At4g18040 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) C.G. S.X.
0.02 2e+0 32 1617685_at CF518938 - - 2e-18 At5g49570 AtPNG1 (Arabidopsis thaliana peptide-N-glycanase 1) C.G. S.X.
0.02 2e+0 32 1612824_at CD712593 - - 3e+0 At3g28230 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-1 38 Arabidopsis thaliana At2g47890 819401 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO - - - C.G. S.X.
0.15 3e-12 73 Glycine max Gma.16172.1.S1_at CD411627 - - 9e-8 At2g47890 zinc finger (B-box type) family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEh0101N10f_at HVSMEh0101N10f - - 3e-1 At2g04066 MATE efflux protein-related C.G. S.X.
0.05 2e-1 38 Oryza sativa Os07g0667300 AK120101.1 - Zn-finger, CONSTANS type domain containing protein 5e-5 At2g22100 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.18 7e-16 85 Populus trichocarpa PtpAffx.128060.1.A1_a_at CV232750 hypothetical protein - 3e-17 At2g47890 zinc finger (B-box type) family protein C.G. S.X.
0.03 3e-2 40 Triticum aestivum TaAffx.84018.1.S1_at CA646263 - - 4e+0 At4g00880 auxin-responsive family protein C.G. S.X.
0.05 5e-2 38 Zea mays Zm.17283.1.A1_at CK368046 hypothetical protein LOC100194129 - 1e-1 At3g51960 bZIP family transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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