Gene omics information

Query gene ID	1620593_at
Gene name	hypothetical protein LOC100252659
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1620593_at	BQ797219	hypothetical protein LOC100252659	-	1e-97	At1g30580	GTP binding	S.X.	H.G.	Please select
0.60	81.9	1609434_at	CF211782	hypothetical protein LOC100240790	-	1e-41	At3g42050	vacuolar ATP synthase subunit H family protein	S.X.	H.G.	Please select
0.50	72.7	1613683_at	CB976586	hypothetical protein LOC100255739	-	7e-15	At1g47560	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1616039_at	CF215123	hypothetical protein LOC100248352	-	1e-20	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	S.X.	H.G.	Please select
0.50	72.7	1619647_at	CB975254	similar to T5E21.11	-	5e-4	At1g27160	valyl-tRNA synthetase / valine--tRNA ligase-related	S.X.	H.G.	Please select
0.29	37.7	1614631_at	CB979660	hypothetical protein LOC100254376	-	1e-137	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	1607151_at	BQ792271	-	-	1e+0	At1g78140	methyltransferase-related	C.G.	S.X.	Please select
0.01	7e-1	34	1621592_s_at	BQ792954	dehydrin	-	2e-3	At2g21490	LEA (DEHYDRIN LEA)	C.G.	S.X.	Please select
0.01	7e-1	34	1614788_at	BQ792954	dehydrin	-	2e-3	At2g21490	LEA (DEHYDRIN LEA)	C.G.	S.X.	Please select
0.02	7e-1	34	1612165_at	CD799201	hypothetical protein LOC100252009	-	9e-17	At5g53360	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1622387_s_at	CF514535	hypothetical protein LOC100245490	-	1e-28	At5g47570	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1621470_at	CB838037	-	-	5e+0	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	C.G.	S.X.	Please select
0.02	3e+0	32	1620404_at	CF203552.1	-	-	2e-36	At3g11830	chaperonin, putative	C.G.	S.X.	Please select
0.01	3e+0	32	1619642_at	CF512453	hypothetical protein LOC100241575	-	3e-28	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.02	3e+0	32	1618943_at	CF516950	-	-	4e-1	At3g03010	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	1e-97	357	Arabidopsis thaliana	At1g30580	839938	GTP binding	F:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.58	0	670	Glycine max	Gma.2708.1.S1_at	AW350781	-	-	1e-82	At1g30580	GTP binding	C.G.	S.X.	Please select
0.24	7e-27	121	Hordeum vulgare	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	C.G.	S.X.	Please select
0.26	2e-39	165	Oryza sativa	Os08g0199300	AK062256.1	-	GTP-binding protein	2e-26	At1g30580	GTP binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.63	2e-140	500	Populus trichocarpa	PtpAffx.149380.1.S1_at	CX659744	hypothetical protein	-	7e-83	At1g30580	GTP binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	6e-29	129	Triticum aestivum	Ta.2982.1.S1_a_at	AY135021.1	GTP-binding protein	-	3e-37	At1g30580	GTP binding	C.G.	S.X.	Please select
0.32	4e-62	238	Zea mays	Zm.968.1.A1_at	CF623311	GTP-binding protein PTD004	-	5e-27	At1g30580	GTP binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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