Gene omics information

Query gene ID	1620542_at
Gene name	hypothetical protein LOC100255788
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	75.2	1620542_at	CB344230	hypothetical protein LOC100255788	-	9e-31	At2g16800	high-affinity nickel-transport family protein	S.X.	H.G.	Please select
0.67	87.9	1607286_at	CF207311	hypothetical protein LOC100267511	-	3e-69	At3g12150	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1616579_at	CF514965	hypothetical protein LOC100260111	-	6e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	S.X.	H.G.	Please select
0.46	66.5	1619252_at	CF206010.1	hypothetical protein LOC100242409	-	1e-28	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	S.X.	H.G.	Please select
0.29	37.7	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	S.X.	H.G.	Please select
0.27	34.0	1615832_at	BQ792735	hypothetical protein LOC100242360	-	1e-10	At2g24860	chaperone protein dnaJ-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	99.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8	99.3	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.1	98.1	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.8	97.8	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.8	97.8	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9	96.6	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.8	96.4	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-28	125	1606542_at	BQ797856	hypothetical protein LOC100250325	-	1e+0	At2g10450	14-3-3 protein, putative / grf15, putative	C.G.	S.X.	Please select
0.02	2e-1	36	1617544_at	CD797813	hypothetical protein LOC100266024	-	2e-9	At1g75500	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.02	2e-1	36	1607784_at	CB340705	-	-	2e+1	At4g18395	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	1621823_at	CF214240	hypothetical protein LOC100253216	-	4e+0	At5g66000	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	1619982_at	CD798980	hypothetical protein LOC100246310	-	4e-140	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select
0.01	7e-1	34	1618084_at	CF373549	hypothetical protein LOC100266970	-	6e-7	At4g33690	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	1616252_at	CF202709.1	hypothetical protein LOC100252560	-	5e-3	At1g23140	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	7e-1	34	1616332_at	CF210511	hypothetical protein LOC100259445	-	2e-1	At4g27660	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	1616209_a_at	CF215621	similar to ZFWD1 (zinc finger WD40 repeat protein 1); nucleic acid binding / zinc ion binding	-	3e-5	At5g51980	WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	9e-31	135	Arabidopsis thaliana	At2g16800	816181	high-affinity nickel-transport family protein	F:nickel ion transmembrane transporter activity, metal ion binding;P:nickel ion transport, metal ion transport;C:integral to membrane, chloroplast;OBPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	2e-23	111	Glycine max	Gma.2521.1.S1_at	AI900841	-	-	1e-26	At2g16800	high-affinity nickel-transport family protein	C.G.	S.X.	Please select
0.11	1e-9	63	Hordeum vulgare	Contig10956_at	Contig10956	-	-	4e-1	At2g16800	high-affinity nickel-transport family protein	C.G.	S.X.	Please select
0.22	1e-12	75	Oryza sativa	Os03g0156700	AK108804.1	-	High-affinity nickel-transporter family protein	3e-6	At4g35080	high-affinity nickel-transport family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	4e-12	73	Populus trichocarpa	PtpAffx.48549.1.A1_at	CK096134	hypothetical protein	-	2e-17	At2g16800	high-affinity nickel-transport family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	TaAffx.9313.1.S1_at	CA603357	-	-	1e-3	At4g08330	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.11920.1.A1_at	BM381842	-	-	2e-2	At3g03020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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