Gene omics information

Query gene ID	1620526_at
Gene name	hypothetical protein LOC100261578
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1620526_at	BQ799509	hypothetical protein LOC100261578	-	1e-104	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	S.X.	H.G.	Please select
0.67	87.9	1613126_at	CF214395	hypothetical protein LOC100232876	-	5e-35	At5g41950	binding	S.X.	H.G.	Please select
0.61	83.2	1614608_at	CF212155	similar to protein transport protein Sec24, putative	-	4e-10	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.60	81.9	1622793_at	CB920514	hypothetical protein LOC100247146 /// hypothetical protein LOC100250759	-	3e-5	At2g17200	ubiquitin family protein	S.X.	H.G.	Please select
0.40	57.7	1614557_s_at	CF405834	hypothetical protein LOC100243157	-	3e-62	At2g03120	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)	S.X.	H.G.	Please select
0.16	16.7	1610625_at	CD802063	hypothetical protein LOC100259247	-	6e-30	At4g08960	phosphotyrosyl phosphatase activator (PTPA) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-20	99	1612267_at	CF211274	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.02	7e-2	38	1615193_at	CF210485	hypothetical protein LOC100249706	-	4e+0	At2g28820	-	C.G.	S.X.	Please select
0.00	3e-1	36	1614676_s_at	BQ793152	ATP synthase subunit a, chloroplastic	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.00	3e-1	36	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.00	3e-1	36	1608138_s_at	CB342671	-	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.01	1e+0	34	1621580_at	CB974796	-	-	3e-5	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	1621055_a_at	CA813802	hypothetical LOC100263712	-	5e-1	At2g04039	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	1615909_s_at	CF518671	hypothetical protein LOC100255269	-	2e-17	At5g58350	WNK4 (WITH NO K (=LYSINE) 4)	C.G.	S.X.	Please select
0.01	1e+0	34	1612707_at	CD801530	hypothetical protein LOC100263457	-	3e-14	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	1e-104	381	Arabidopsis thaliana	At1g54340	841875	ICDH (ISOCITRATE DEHYDROGENASE)	NADP-specific isocitrate dehydrogenase (ICDH)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	2e-98	361	Glycine max	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.19	1e-44	180	Hordeum vulgare	Contig1788_at	Contig1788	-	-	8e-27	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.31	7e-111	402	Oryza sativa	Os05g0573200	AF155334.1	-	NADP-isocitrate dehydrogenase	7e-100	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	4e-164	579	Populus trichocarpa	Ptp.5871.1.S1_at	CV244861	hypothetical protein	-	3e-91	At1g54340	ICDH (ISOCITRATE DEHYDROGENASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	3e-96	353	Triticum aestivum	Ta.1053.1.S1_x_at	BJ251547	-	-	6e-79	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select
0.29	7e-89	327	Zea mays	Zm.5861.1.A1_at	CD437163	hypothetical protein LOC100272371	-	5e-67	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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