Gene omics information

Query gene ID	1620494_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1620494_at	CF414991	-	-	1e+0	At5g55190	RAN3 (RAN GTPASE 3)	S.X.	H.G.	Please select
0.77	92.3	1611458_at	CF207715	hypothetical protein LOC100243644	-	2e-18	At2g35530	bZIP transcription factor family protein	S.X.	H.G.	Please select
0.71	89.5	1607992_at	CF372568	hypothetical protein LOC100246062	-	1e+0	At3g45510	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	87.9	1608653_at	CB975644	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	S.X.	H.G.	Please select
0.42	60.1	1612660_at	CB980017	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	S.X.	H.G.	Please select
0.32	43.1	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	S.X.	H.G.	Please select
0.31	41.3	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	92.5	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.2	89.9	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.1	89.1	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.1	89.1	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1621369_at	CB970235	hypothetical protein LOC100258281	-	3e-43	At4g29160	SNF7.1	C.G.	S.X.	Please select
0.03	3e-1	34	1619486_at	CB001727	hypothetical protein LOC100241765	-	5e+0	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1606829_at	CB001727	-	-	5e+0	At5g50790	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1617565_at	CD008058	-	-	3e-1	At2g04020	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1613753_at	CD008058	-	-	3e-1	At2g04020	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1609619_at	CB982264	hypothetical protein LOC100242237	-	5e-103	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.02	1e+0	32	1609445_at	CF215229	hypothetical protein LOC100242218	-	6e-69	At4g29160	SNF7.1	C.G.	S.X.	Please select
0.02	1e+0	32	1607940_at	BQ800262	hypothetical protein LOC100261463	-	6e-1	At1g69470	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1607115_at	CB341410	-	-	9e-1	At2g21580	40S ribosomal protein S25 (RPS25B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g55190	835612	RAN3 (RAN GTPASE 3)	A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.7627.1.A1_at	BU549160	-	-	5e-10	At1g17440	EER4 (ENHANCED ETHYLENE RESPONSE 4)	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	EBro08_SQ007_D20_at	EBro08_SQ007_D20	-	-	2e-1	At1g65230	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os02g0148100	AF216317.1	-	MAP kinase MAPK2 (MAP kinase 3)	7e-63	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.54862.1.S1_at	DN494751	-	-	6e-2	At5g16830	SYP21 (SYNTAXIN OF PLANTS 21)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.18512.1.S1_at	CA638107	-	-	3e+0	At1g26300	BSD domain-containing protein	C.G.	S.X.	Please select
0.04	7e+0	30	Zea mays	ZmAffx.537.1.A1_at	AI711809	-	-	3e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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