Gene omics information

Query gene ID	1620491_at
Gene name	hypothetical protein LOC100257942
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1620491_at	CD800015	hypothetical protein LOC100257942	-	2e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	S.X.	H.G.	Please select
0.67	87.9	1613676_at	CB002629	hypothetical protein LOC100266011	-	4e+0	At3g19200	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	S.X.	H.G.	Please select
0.40	57.7	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	S.X.	H.G.	Please select
0.40	57.7	1617496_s_at	BQ797047	hypothetical protein LOC100247953	-	7e-25	At3g12570	FYD	S.X.	H.G.	Please select
0.30	39.4	1614977_at	CB978594	-	-	2e+1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	99.1	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.0	99.1	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8	99.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.2	98.8	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.6	98.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2	98.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.1	98.1	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.8	97.8	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	5e-54	210	1612696_s_at	CD799639	-	-	5e+0	At1g26470	-	C.G.	S.X.	Please select
0.08	1e-23	109	1618537_at	CA818424	-	-	2e+0	At3g23420	F-box family protein-related	C.G.	S.X.	Please select
0.05	3e-6	52	1607630_at	CA808955	-	-	1e+0	At2g19340	membrane protein, putative	C.G.	S.X.	Please select
0.01	4e-2	38	1618630_at	CA816306	-	-	3e+0	At4g33690	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	38	1611810_at	CB981503	similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase	-	1e-22	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select
0.02	2e-1	36	1609481_at	BQ799713	-	-	4e-45	At3g53580	diaminopimelate epimerase family protein	C.G.	S.X.	Please select
0.01	2e-1	36	1609211_at	BQ795995	hypothetical protein LOC100250808	-	6e-5	At2g33490	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	2e-1	36	1607081_at	BQ799686	-	-	4e+0	At4g13870	WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE)	C.G.	S.X.	Please select
0.02	6e-1	34	1612674_at	CB837053	-	-	7e+0	At5g14910	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g56540	835755	AGP14 (ARABINOGALACTAN PROTEIN 14)	Encodes arabinogalactan protein (AGP14).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e-5	50	Glycine max	GmaAffx.93125.1.S1_x_at	CF808797	-	-	4e+0	At5g38380	-	C.G.	S.X.	Please select
0.32	7e-85	313	Hordeum vulgare	MitoContig1_at	MitoContig1	-	-	3e+0	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	C.G.	S.X.	Please select
0.45	0	892	Oryza sativa	Os08g0151000	AK106331.1	-	Myb, DNA-binding domain containing protein	5e-8	At1g19000	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.55	4e-175	615	Populus trichocarpa	Ptp.3063.1.S1_s_at	AJ774412	-	-	4e+0	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	0	908	Triticum aestivum	TaAffx.143998.1.S1_at	K01229.1	-	-	2e-1	At1g13760	unknown protein	C.G.	S.X.	Please select
0.38	0	908	Zea mays	ZmAffx.1219.1.S1_s_at	40794996-166	-	-	2e-1	At1g13760	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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