Gene omics information

Query gene ID	1620463_at
Gene name	hypothetical protein LOC100265246
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.68	88.0	1620463_at	CD013332	hypothetical protein LOC100265246	-	1e+0	At2g27970	CKS2 (CDK-subunit 2)	S.X.	H.G.	Please select
0.77	92.3	1618103_at	CF208972	-	-	4e+0	At2g17070	unknown protein	S.X.	H.G.	Please select
0.58	79.8	1620191_at	CB968759	hypothetical protein LOC100245656	-	1e+0	At3g08636	unknown protein	S.X.	H.G.	Please select
0.48	68.8	1607444_at	BQ798524	hypothetical protein LOC100247182	-	1e+0	At4g20095	unknown protein	S.X.	H.G.	Please select
0.46	66.5	1613762_at	CF404411	hypothetical protein LOC100256306	-	5e-3	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	S.X.	H.G.	Please select
0.44	64.1	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	S.X.	H.G.	Please select
0.36	50.7	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select
0.34	46.8	1614602_at	CB004149	hypothetical protein LOC100244335	-	1e-32	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	S.X.	H.G.	Please select
0.34	46.8	1611523_at	CD801109	hypothetical protein LOC100267138	-	6e-16	At3g21865	PEX22 (peroxin 22)	S.X.	H.G.	Please select
0.34	46.8	1613769_at	CB970019	hypothetical protein LOC100265267	-	4e-48	At1g51690	ATB ALPHA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.9	87.2	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-1	34	1615980_at	CD007021	-	-	1e+1	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.05	3e-1	34	1612172_at	CD007021	-	-	1e+1	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please select
0.03	3e-1	34	1609323_at	CF513393	hypothetical protein LOC100258561	-	4e-4	At4g05400	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1621175_at	CF214645	-	-	5e+0	At3g18650	agl103 (AGAMOUS-LIKE 103)	C.G.	S.X.	Please select
0.03	1e+0	32	1620531_at	CF202346.1	-	-	2e+0	At5g62830	F-box family protein-related	C.G.	S.X.	Please select
0.03	1e+0	32	1617137_x_at	CF202346.1	-	-	2e+0	At5g62830	F-box family protein-related	C.G.	S.X.	Please select
0.01	1e+0	32	1609310_at	CB342641	hypothetical protein LOC100249576	-	2e-177	At1g56190	phosphoglycerate kinase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1608295_at	CA817667	hypothetical protein LOC100258713	-	3e-7	At5g59610	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	1621925_at	AY427090.1	-	-	3e+0	At1g04270	RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g27970	817341	CKS2 (CDK-subunit 2)	F:cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity;P:cell cycle;C:cellular_component unknown;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	7e-24	111	Glycine max	Gma.8340.1.S1_at	AW201258	-	-	3e-3	At1g72390	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	HVSMEf0013L02r2_at	HVSMEf0013L02r2	-	-	1e+1	At5g54067	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os06g0222400	AK063886.1	-	Hypothetical protein	2e-3	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-7	57	Populus trichocarpa	PtpAffx.120877.1.A1_at	CV262573	hypothetical protein	-	4e-8	At1g72390	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.1629.1.S1_at	BE446127	-	-	1e+0	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.530.2.A1_at	AI668127	hypothetical protein LOC100273219	-	3e+0	At2g17972	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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