Gene omics information

Query gene ID	1620454_s_at
Gene name	lipid transfer protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1620454_s_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.75	91.3	1609281_s_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.67	87.9	1608241_at	CD798818	hypothetical protein LOC100251333	-	1e-15	At5g06000	EIF3G2	S.X.	H.G.	Please select
0.55	77.3	1606671_at	CA809598	hypothetical protein LOC100262399	-	3e-21	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.42	60.1	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.36	50.7	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	S.X.	H.G.	Please select
0.33	45.7	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.32	43.1	1615237_at	CB913715	hypothetical protein LOC100246592	-	3e-18	At2g37110	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.1	89.1	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	1211	1614363_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.69	0	1031	1622231_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.69	0	1031	1609281_s_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.60	0	654	1617032_s_at	AF465408.1	lipid transfer protein /// lipid transfer protein	-	9e-1	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.04	2e-7	56	1622416_at	CF518913	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.03	2e-1	36	1616914_at	CF405605	-	-	1e-14	At3g22845	emp24/gp25L/p24 protein-related	C.G.	S.X.	Please select
0.01	6e-1	34	1618681_at	BQ797518	hypothetical protein LOC100241923	-	1e-30	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	C.G.	S.X.	Please select
0.02	6e-1	34	1614080_at	CF517252	hypothetical protein LOC100262480	-	1e-85	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	C.G.	S.X.	Please select
0.02	2e+0	32	1621603_at	CB921057	hypothetical protein LOC100264796	-	1e-3	At5g27660	catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-2	40	Glycine max	Gma.1096.1.S1_at	CD407195	-	-	4e-4	At5g59310	LTP4 (LIPID TRANSFER PROTEIN 4)	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	EBpi01_SQ002_L03_at	EBpi01_SQ002_L03	-	-	3e+0	At3g46090	ZAT7	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	Os06g0287400	9634.m01782	-	-	8e-1	At1g77710	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	34	Populus trichocarpa	PtpAffx.25004.4.S1_a_at	CV237911	hypothetical protein	-	1e-3	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-4	48	Triticum aestivum	TaAffx.115102.1.S1_at	CA619048	-	-	4e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.04	6e-5	48	Zea mays	Zm.4168.1.A1_at	BM337240	hypothetical protein LOC100274469	-	7e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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