CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620442_at

Gene name hypothetical protein LOC100266848

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620442_at CB971589 hypothetical protein LOC100266848 - 1e-15 At3g02110 scpl25 (serine carboxypeptidase-like 25) S.X. H.G.
0.67 87.9 1620170_at CB974375 hypothetical protein LOC100246815 - 1e-4 At4g36920 AP2 (APETALA 2) S.X. H.G.
0.50 72.7 1607417_at CF512464 hypothetical protein LOC100245522 - 1e-4 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) S.X. H.G.
0.46 66.5 1611804_at CF513259 hypothetical protein LOC100252436 - 1e-1 At2g16890 UDP-glucoronosyl/UDP-glucosyl transferase family protein S.X. H.G.
0.40 57.7 1620954_at CF513203 hypothetical protein LOC100242907 - 7e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) S.X. H.G.
0.33 45.7 1612677_at CF512277 hypothetical protein LOC100252316 - 1e+0 At3g21730 dihydroneopterin aldolase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 99.0 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
6.6 98.9 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
6.4 98.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
6.1 98.7 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.9 98.6 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.3 98.2 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.1 98.1 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.8 97.8 GSM436352 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.8 97.8 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-5 46 1616345_at CB920761 hypothetical protein LOC100241649 - 1e-9 At4g30810 scpl29 (serine carboxypeptidase-like 29) C.G. S.X.
0.03 7e-2 36 1614867_at CF200921.1 hypothetical protein LOC100263750 - 2e-9 At3g17180 scpl33 (serine carboxypeptidase-like 33) C.G. S.X.
0.03 3e-1 34 1606955_at CD801587 hypothetical protein LOC100264575 - 1e+0 At5g17760 AAA-type ATPase family protein C.G. S.X.
0.04 5e+0 30 1616130_at CB981475 - - 8e+0 At3g28140 calmodulin-binding protein C.G. S.X.
0.02 5e+0 30 1608871_at CB340733 hypothetical protein LOC100266016 - 1e-16 At2g35500 shikimate kinase-related C.G. S.X.
0.02 2e+1 28 1622064_at CF606041 R2R3 Myb14 transcription factor - 6e-1 At1g50220 unknown protein C.G. S.X.
0.02 2e+1 28 1621632_at BQ794172 hypothetical protein LOC100266611 - 9e-28 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.02 2e+1 28 1620319_s_at CF205531.1 R2R3 Myb14 transcription factor - 9e-2 At4g11660 AT-HSFB2B C.G. S.X.
0.03 2e+1 28 1620019_at CB968892 hypothetical protein LOC100258966 - 1e-9 At4g38690 1-phosphatidylinositol phosphodiesterase-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-15 83 Arabidopsis thaliana At3g02110 821207 scpl25 (serine carboxypeptidase-like 25) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB - - - C.G. S.X.
0.37 4e-50 198 Glycine max GmaAffx.81897.1.S1_at BG654280 - - 3e-16 At3g02110 scpl25 (serine carboxypeptidase-like 25) C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig18343_at Contig18343 - - 2e+0 At2g05070 LHCB2.2 C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.15461.1.S1_at - - - 0 C.G. S.X.
0.24 3e-57 222 Populus trichocarpa PtpAffx.204123.1.S1_at pmrna8134 hypothetical protein - 1e-23 At3g02110 scpl25 (serine carboxypeptidase-like 25) C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.31179.1.S1_at CA618756 - - 1e+1 At5g39581 unknown protein C.G. S.X.
0.04 2e+0 32 Zea mays Zm.11947.1.A1_at BM382038 hypothetical protein LOC100277020 - 4e+0 At4g35410 clathrin adaptor complex small chain family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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