CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620430_at

Gene name hypothetical protein LOC100265599

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620430_at CB005492 hypothetical protein LOC100265599 - 2e-1 At5g63010 WD-40 repeat family protein S.X. H.G.
0.50 72.7 1608913_at CF404958 hypothetical protein LOC100250308 - 3e-1 At5g40570 surfeit locus protein 2 family protein / SURF2 family protein S.X. H.G.
0.31 41.3 1606481_at CF403961 hypothetical protein LOC100265434 - 2e-1 At5g30500 galactinol synthase, putative S.X. H.G.
0.27 34.0 1607195_at CF209963 hypothetical protein LOC100240982 - 1e-1 At4g27460 CBS domain-containing protein S.X. H.G.
0.05 6.0 1615142_at CF405765 hypothetical protein LOC100266152 - 6e-2 At1g24010 - S.X. H.G.
0.03 4.2 1609086_s_at CA808952 similar to F2D10.18 - 6e-16 At1g20696 HMGB3 (HIGH MOBILITY GROUP B 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.8 97.8 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.6 97.6 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.0 94.2 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 963 1607824_at CB005492 - - 2e-1 At5g63010 WD-40 repeat family protein C.G. S.X.
0.03 1e+0 32 1617088_at BQ797725 hypothetical protein LOC100245381 - 1e-31 At4g35230 BSK1 (BR-SIGNALING KINASE 1) C.G. S.X.
0.01 1e+0 32 1609373_at CD800734 hypothetical protein LOC100261333 - 0 Atcg00900 - C.G. S.X.
0.03 4e+0 30 1622359_at CK136964.1 - - 3e-1 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
0.03 4e+0 30 1620054_at CF214049 hypothetical protein LOC100259508 - 1e-3 At1g47970 unknown protein C.G. S.X.
0.02 4e+0 30 1619373_at CB920390 hypothetical protein LOC100258412 - 5e-50 At5g43940 HOT5 (sensitive to hot temperatures 5) C.G. S.X.
0.02 4e+0 30 1616995_at CB976742 - - 2e-22 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) C.G. S.X.
0.02 4e+0 30 1615797_at CF513517 hypothetical protein LOC100256435 - 9e-27 At5g41310 kinesin motor protein-related C.G. S.X.
0.03 4e+0 30 1609728_at CK136964.1 - - 3e-1 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Arabidopsis thaliana At5g63010 836421 WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBA - - - C.G. S.X.
0.06 2e-5 50 Glycine max Gma.10672.3.S1_at BQ629897 - - 2e-3 At5g63010 WD-40 repeat family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig25481_at Contig25481 - - 1e+1 At5g15640 mitochondrial substrate carrier family protein C.G. S.X.
0.02 7e+0 32 Oryza sativa Os03g0853800 AK102872.1 - Conserved hypothetical protein 2e+0 At3g15720 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.19655.1.A1_at CN520033 hypothetical protein - 5e-7 At5g63010 WD-40 repeat family protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum Ta.7427.2.A1_at BJ307801 - - 7e-2 At4g27310 zinc finger (B-box type) family protein C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.1375.1.S1_at 40794996-50 - - 2e+0 At5g48510 speckle-type POZ protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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