Gene omics information

Query gene ID	1620426_at
Gene name	similar to DNA-binding protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	S.X.	H.G.	Please select
0.80	93.6	1620491_at	CD800015	hypothetical protein LOC100257942	-	2e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	S.X.	H.G.	Please select
0.50	72.7	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	S.X.	H.G.	Please select
0.40	57.7	1614977_at	CB978594	-	-	2e+1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.36	50.7	1617496_s_at	BQ797047	hypothetical protein LOC100247953	-	7e-25	At3g12570	FYD	S.X.	H.G.	Please select
0.35	48.5	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	99.6	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.7	99.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.9	99.1	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.2	98.8	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.8	98.6	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5	97.5	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-7	54	1610832_at	BQ795707	hypothetical protein LOC100262194	-	2e-19	At4g30935	WRKY32	C.G.	S.X.	Please select
0.03	1e-5	50	1619424_at	BQ800205	hypothetical protein LOC100267695	-	5e-9	At4g23550	WRKY29	C.G.	S.X.	Please select
0.05	4e-5	48	1613407_at	CD006434	-	-	1e+0	At3g57280	unknown protein	C.G.	S.X.	Please select
0.05	4e-5	48	1609636_at	CD006434	hypothetical protein LOC100246612	-	1e+0	At3g57280	unknown protein	C.G.	S.X.	Please select
0.03	2e-4	46	1610064_at	CB341653	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	C.G.	S.X.	Please select
0.02	2e-1	36	1622495_at	BM436258	hypothetical protein LOC100248841	-	4e-26	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	C.G.	S.X.	Please select
0.02	6e-1	34	1616410_at	CD720592	-	-	2e-15	At3g21250	ATMRP6	C.G.	S.X.	Please select
0.02	6e-1	34	1612609_at	CD720592	-	-	2e-15	At3g21250	ATMRP6	C.G.	S.X.	Please select
0.02	6e-1	34	1607979_at	BQ797675	hypothetical protein LOC100240913	-	5e-3	At2g19130	S-locus lectin protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-20	101	Arabidopsis thaliana	At1g13960	837956	WRKY4	Encodes WRKY DNA-binding protein 4 (WRKY4).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	3e-43	176	Glycine max	GmaAffx.91449.1.S1_s_at	CF807174	transcription factor	-	5e-9	At2g03340	WRKY3	C.G.	S.X.	Please select
0.08	1e-24	113	Hordeum vulgare	Contig12033_at	Contig12033	-	-	1e-11	At1g13960	WRKY4	C.G.	S.X.	Please select
0.11	4e-25	117	Oryza sativa	OsAffx.7764.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	2e-69	264	Populus trichocarpa	PtpAffx.204127.1.S1_at	pmrna8140	hypothetical protein	-	6e-23	At1g13960	WRKY4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	8e-28	125	Triticum aestivum	TaAffx.105562.1.S1_at	CA732651	-	-	3e-6	At1g13960	WRKY4	C.G.	S.X.	Please select
0.11	7e-20	97	Zea mays	ZmAffx.795.1.A1_at	AI770340	-	-	3e-3	At5g46350	WRKY8	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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