CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620424_at

Gene name hypothetical protein LOC100255217

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1620424_at CB349003 hypothetical protein LOC100255217 - 2e-3 At5g05270 chalcone-flavanone isomerase family protein S.X. H.G.
0.55 77.3 1611091_s_at AB073014.1 MYBPA1 protein - 4e-13 At1g22640 MYB3 (MYB DOMAIN PROTEIN 3) S.X. H.G.
0.55 77.3 1616094_at CF372451 MYBPA1 protein - 5e-8 At1g18570 MYB51 (MYB DOMAIN PROTEIN 51) S.X. H.G.
0.50 72.7 1615542_at CF415517 hypothetical protein LOC100245973 - 4e+0 At4g26288 - S.X. H.G.
0.33 45.7 1619642_at CF512453 hypothetical protein LOC100241575 - 3e-28 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) S.X. H.G.
0.33 45.7 1615295_at CF373832 hypothetical protein LOC100259092 - 4e-1 At4g08190 Ras-related GTP-binding protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.8 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436416 V. riparia (VR, PI588259) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436417 V. riparia (VR, PI588259) SD, 13h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436398 V. riparia (VR, PI588259) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436395 V. riparia (VR, PI588259) LD, 15h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 3e-92 337 1621101_s_at CF210830 hypothetical protein LOC100255217 - 2e+0 At2g15240 UNC-50 family protein C.G. S.X.
0.14 1e-29 129 1615603_at CB346190 - - 2e-1 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial C.G. S.X.
0.02 4e-2 38 1620877_at CF607766 hypothetical protein LOC100258862 - 4e-5 At5g66320 zinc finger (GATA type) family protein C.G. S.X.
0.02 4e-2 38 1612008_at CF604996 hypothetical protein LOC100243222 - 1e+0 At4g08790 nitrilase, putative C.G. S.X.
0.02 4e-2 38 1608279_at CB001634 - - 4e-5 At5g66320 zinc finger (GATA type) family protein C.G. S.X.
0.02 1e-1 36 1618179_at CF568870 - - 4e-3 At1g45230 defective chloroplasts and leaves protein-related / DCL protein-related C.G. S.X.
0.02 1e-1 36 1615578_at CF207555 hypothetical protein LOC100246575 - 3e-58 At2g46230 - C.G. S.X.
0.01 6e-1 34 1622595_at BQ795068 - - 4e-3 At3g56860 UBP1 interacting protein 2a (UBA2a) C.G. S.X.
0.02 6e-1 34 1621579_at CB004209 - - 7e+0 At5g55810 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 2e-3 44 Arabidopsis thaliana At5g05270 830409 chalcone-flavanone isomerase family protein F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P - - - C.G. S.X.
0.26 2e-22 107 Glycine max GmaAffx.93494.1.A1_s_at CF809219 chalcone isomerase 4-like - 3e-4 At5g05270 chalcone-flavanone isomerase family protein C.G. S.X.
0.09 1e-12 73 Hordeum vulgare Contig6242_at Contig6242 - - 8e-3 At5g05270 chalcone-flavanone isomerase family protein C.G. S.X.
0.07 3e-10 67 Oryza sativa Os12g0115700 AK099443.1 - Chalcone-flavanone isomerase family protein 3e+0 At4g04745 unknown protein C.G. S.X.
0.29 3e-58 226 Populus trichocarpa Ptp.1512.1.S1_s_at CV270596 chalcone isomerase-like protein - 2e-22 At5g38060 unknown protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.104482.1.S1_at CB884223 - - 4e-1 At5g05710 pleckstrin homology (PH) domain-containing protein C.G. S.X.
0.04 2e-8 59 Zea mays Zm.4213.1.A1_at BG841480 IDP158 protein /// chalcone--flavonone isomerase /// chalcone--flavonone isomerase - 1e-5 At5g05270 chalcone-flavanone isomerase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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