Gene omics information

Query gene ID	1620412_at
Gene name	hypothetical protein LOC100247288
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1620412_at	CF511306	hypothetical protein LOC100247288	-	6e-10	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please select
0.55	77.3	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please select
0.44	64.1	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select
0.31	41.3	1618362_s_at	CF200684.1	hypothetical protein LOC100255189	-	2e-74	At1g10670	ACLA-1	S.X.	H.G.	Please select
0.19	20.9	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	S.X.	H.G.	Please select
0.06	6.8	1609392_s_at	CF210020	hypothetical protein LOC100242395	-	2e-47	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	99.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.5	98.9	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
3.5	95.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	1619624_at	CA813734	-	-	6e+0	At5g60230	SEN2 (splicing endonuclease 2)	C.G.	S.X.	Please select
0.01	3e+0	32	1619744_at	CF208885	hypothetical protein LOC100249117	-	2e-94	At1g18070	EF-1-alpha-related GTP-binding protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	1617015_at	CF209172	hypothetical protein LOC100251082	-	3e-10	At3g07010	pectate lyase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1616627_at	CA809160	hypothetical protein LOC100255039	-	6e+0	At5g02280	synbindin, putative	C.G.	S.X.	Please select
0.02	3e+0	32	1616116_at	CF604141	hypothetical protein LOC100268134	-	2e-21	At5g20250	DIN10 (DARK INDUCIBLE 10)	C.G.	S.X.	Please select
0.02	3e+0	32	1614153_at	CF207979	hypothetical protein LOC100267681	-	6e-43	At5g13110	G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2)	C.G.	S.X.	Please select
0.02	3e+0	32	1614185_at	CF515676	-	-	2e+0	At5g67120	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1610434_at	CF404432	hypothetical protein LOC100244562	-	1e+0	At5g24090	acidic endochitinase (CHIB1)	C.G.	S.X.	Please select
0.02	3e+0	32	1609340_at	CF415722	hypothetical protein LOC100245606	-	1e-7	At3g24490	transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-10	65	Arabidopsis thaliana	At1g36160	840521	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. Essential for very long chain fatty acid elongation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-8	61	Glycine max	Gma.6558.1.S1_s_at	BU084402	-	-	2e-6	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.06	4e-6	52	Hordeum vulgare	Contig5989_s_at	Contig5989	-	-	6e-18	At1g36180	ACC2 (ACETYL-COA CARBOXYLASE 2)	C.G.	S.X.	Please select
0.08	7e-8	59	Oryza sativa	Os05g0295300	AK059261.1	-	Acetyl-coenzyme A carboxylase (EC 6.4.1.2)	2e+0	At3g24280	SMAP2 (small acidic protein 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	4e-24	113	Populus trichocarpa	Ptp.6482.1.S1_s_at	BI129616	hypothetical protein	-	1e+0	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	34	Triticum aestivum	TaAffx.112975.1.S1_at	CA619323	-	-	2e-1	At1g20110	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.05	4e-6	52	Zea mays	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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