CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620387_at

Gene name hypothetical protein LOC100260954

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1620387_at CD719602 hypothetical protein LOC100260954 - 2e-30 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) S.X. H.G.
0.43 61.5 1606787_at CF373239 hypothetical protein LOC100258674 - 4e-1 At1g13620 unknown protein S.X. H.G.
0.40 57.7 1620282_at CB977969 hypothetical protein LOC100243325 - 5e+0 At5g13440 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative S.X. H.G.
0.38 53.6 1612900_at CD797784 hypothetical protein LOC100259949 - 5e+0 At5g44585 unknown protein S.X. H.G.
0.26 32.0 1611871_at CF415063 dehydroascorbate reductase - 2e-9 At1g19570 DHAR1 (dehydroascorbate reductase) S.X. H.G.
0.11 11.3 1619095_s_at CB341757 hypothetical protein LOC100257742 - 8e-8 At5g63280 zinc finger (C2H2 type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 96.6 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.7 96.2 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
3.6 96.0 GSM147731 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 60
3.3 95.2 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41
3.1 94.6 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.9 93.8 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.9 93.8 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
2.9 93.8 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
2.9 93.8 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
2.7 93.0 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1406 1607773_at CD719602 - - 2e-30 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) C.G. S.X.
0.02 3e-2 38 1622311_at CF513797 - - 2e+0 At2g45990 unknown protein C.G. S.X.
0.02 4e-1 34 1622492_at CB004424 - - 4e-1 At2g29290 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.02 4e-1 34 1622376_at CD719388 - - 3e-1 At2g14095 unknown protein C.G. S.X.
0.02 4e-1 34 1618656_at CB004424 - - 4e-1 At2g29290 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.03 4e-1 34 1615980_at CD007021 - - 1e+1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) C.G. S.X.
0.03 4e-1 34 1615662_at CD005936 - - 1e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.03 4e-1 34 1612172_at CD007021 - - 1e+1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) C.G. S.X.
0.03 4e-1 34 1611874_at CD005936 - - 1e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-30 133 Arabidopsis thaliana At5g07290 830620 AML4 (ARABIDOPSIS MEI2-LIKE 4) AML4 A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML4 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM14. AML4 is expressed during embryo development (heart and torpedo stage) and in vegetative and floral apices. - - - C.G. S.X.
0.19 4e-26 119 Glycine max Gma.9509.2.S1_a_at BE058737 - - 8e-24 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) C.G. S.X.
0.06 5e-8 57 Hordeum vulgare Contig6774_at Contig6774 - - 2e-34 At5g61960 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) C.G. S.X.
0.07 5e-14 79 Oryza sativa Os05g0102800 AK120322.1 - RNA recognition motif 2 domain containing protein 5e-13 At5g61960 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) C.G. S.X.
0.19 7e-34 145 Populus trichocarpa PtpAffx.75526.2.A1_at CV270158 hypothetical protein - 4e-26 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) C.G. S.X.
0.08 6e-3 42 Triticum aestivum Ta.622.3.S1_at CA692932 AML15 - 7e-1 At4g18120 AML3 (ARABIDOPSIS MEI2-LIKE 3) C.G. S.X.
0.14 4e-14 77 Zea mays Zm.3770.2.A1_at CD437110 hypothetical protein LOC100278844 - 2e-47 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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