CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620380_x_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1620380_x_at CF203025.1 - - 1e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) S.X. H.G.
0.57 79.8 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) S.X. H.G.
0.50 72.7 1612361_at CF202732.1 - - 3e-58 At5g42020 BIP2 S.X. H.G.
0.46 66.5 1621187_s_at CF201896.1 - - 8e+0 At5g50345 - S.X. H.G.
0.40 57.7 1618907_x_at CF202612.1 - - 4e+0 At5g17470 calmodulin-related protein, putative S.X. H.G.
0.35 48.5 1618973_s_at CF204369.1 hypothetical protein LOC100267103 - 1e+0 At3g61560 reticulon family protein (RTNLB6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.5 99.8 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
8.5 99.4 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
8.2 99.4 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
7.9 99.3 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
7.8 99.3 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
7.7 99.3 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
7.6 99.3 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
7.5 99.2 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
7.2 99.1 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
7.1 99.1 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.64 8e-50 194 1619608_at CF202280.1 - - 2e-19 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.64 8e-50 194 1612848_x_at CF202280.1 - - 2e-19 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.26 8e-50 194 1610124_at CA816957 hypothetical protein LOC100267942 - 7e-12 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.42 2e-47 186 1617102_at CF202285.1 - - 2e-12 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.64 2e-47 186 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.60 7e-44 174 1618020_x_at CB972570 hypothetical protein LOC100267942 - 8e-4 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.21 1e-42 171 1616847_s_at CA816751 hypothetical protein LOC100267942 - 2e-12 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.20 7e-41 165 1613936_x_at CF568996 - - 8e-24 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.57 1e-30 131 1621341_at CA814621 - - 2e+0 At5g42020 BIP2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 36 Arabidopsis thaliana At5g38410 833828 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) F:ribulose-bisphosphate carboxylase activity;P:response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 8 components;POB - - - C.G. S.X.
0.04 8e-1 34 Glycine max GmaAffx.70380.1.S1_at BM271293 - - 8e-2 At1g78150 unknown protein C.G. S.X.
0.04 4e+0 30 Hordeum vulgare HVSMEf0013J20f_at HVSMEf0013J20f - - 3e+0 At4g01925 DC1 domain-containing protein C.G. S.X.
0.04 2e+1 30 Oryza sativa OsAffx.5335.2.S1_x_at - - - 0 C.G. S.X.
0.05 1e+1 30 Populus trichocarpa PtpAffx.50263.1.A1_at CV252613 - - 4e+0 At4g10920 KELP C.G. S.X.
0.05 2e+0 32 Triticum aestivum TaAffx.109027.1.S1_x_at CA681071 - - 9e+0 At4g35660 unknown protein C.G. S.X.
0.06 4e+0 30 Zea mays Zm.8881.1.S1_at BM056113 Hypothetical protein LOC100192858 - 2e+0 At3g25545 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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