CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620333_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1620333_at CF608264 - - 1e-10 At3g08020 protein binding / zinc ion binding S.X. H.G.
0.44 64.1 1621260_at BQ797265 - - 3e-1 At4g30630 unknown protein S.X. H.G.
0.33 45.7 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein S.X. H.G.
0.24 28.7 1616416_at CB349840 hypothetical protein LOC100251243 - 7e+0 At3g43740 leucine-rich repeat family protein S.X. H.G.
0.13 13.3 1606871_at CB970216 hypothetical protein LOC100265666 - 1e-3 At4g11090 unknown protein S.X. H.G.
0.12 12.1 1613468_at CF405048 hypothetical protein LOC100250231 - 3e-55 At3g04730 IAA16 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 97.1 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
4.1 96.9 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
4.1 96.9 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.4 95.5 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.2 94.9 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
3.1 94.6 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53
2.9 93.8 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.9 93.8 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.8 93.4 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1413 1616536_at CF608264 hypothetical protein LOC100249974 - 1e-10 At3g08020 protein binding / zinc ion binding C.G. S.X.
0.02 1e-1 36 1619615_s_at CF212724 chloroplast chaperonin 21 - 1e-17 At5g20720 CPN20 (CHAPERONIN 20) C.G. S.X.
0.02 1e-1 36 1614856_at CD718534 hypothetical protein LOC100267892 - 4e-11 At5g20720 CPN20 (CHAPERONIN 20) C.G. S.X.
0.03 1e-1 36 1611415_at AY427153.1 - - 3e-4 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.03 1e-1 36 1607626_at AY427153.1 - - 3e-4 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
0.01 4e-1 34 1616179_at CB982323 - - 0 Atcg01000 - C.G. S.X.
0.02 4e-1 34 1614035_at BM437744 - - 3e-2 At2g29460 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) C.G. S.X.
0.02 4e-1 34 1610243_at BM437744 hypothetical protein LOC100242434 - 3e-2 At2g29460 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) C.G. S.X.
0.03 2e+0 32 1622393_at CF373123 proline rich protein 1 - 1e+0 At5g67460 glycosyl hydrolase family protein 17 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-10 67 Arabidopsis thaliana At3g08020 819993 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFB - - - C.G. S.X.
0.08 2e-19 97 Glycine max Gma.12975.1.A1_at CD390818 - - 4e-1 At3g08020 protein binding / zinc ion binding C.G. S.X.
0.03 7e-1 34 Hordeum vulgare HVSMEf0021K22r2_at HVSMEf0021K22r2 - - 2e-1 At1g74010 strictosidine synthase family protein C.G. S.X.
0.03 5e-2 40 Oryza sativa Os04g0215800 9630.m02680 - - 3e-1 At4g26470 calcium ion binding C.G. S.X.
0.18 3e-27 123 Populus trichocarpa Ptp.4233.1.S1_at BU837574 hypothetical protein - 2e-12 At3g08020 protein binding / zinc ion binding C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.9802.1.A1_at BJ232036 - - 1e+0 At1g23050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.406.6.A1_at AI670428 - - 1e+1 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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