Gene omics information

Query gene ID	1620332_at
Gene name	similar to predicted protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1620332_at	CF415733	similar to predicted protein	-	1e-71	At5g10390	histone H3	S.X.	H.G.	Please select
0.91	98.8	1608056_at	CF511408	hypothetical protein LOC100254490	-	4e-31	At1g08880	H2AXA	S.X.	H.G.	Please select
0.91	98.8	1622440_at	CF372331	similar to predicted protein	-	5e-43	At5g10400	histone H3	S.X.	H.G.	Please select
0.83	94.6	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	S.X.	H.G.	Please select
0.83	94.6	1612573_at	CF415684	similar to predicted protein	-	4e-65	At5g10400	histone H3	S.X.	H.G.	Please select
0.80	93.6	1618135_at	CB973285	hypothetical protein LOC100256203	-	1e-9	At5g27670	HTA7 (HISTONE H2A 7)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.4	99.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
8.1	99.4	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
8.1	99.4	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.6	98.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
5.2	98.2	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	5e-170	595	1614219_at	CF413920	similar to predicted protein	-	3e-47	At5g10400	histone H3	C.G.	S.X.	Please select
0.50	4e-90	329	1612573_at	CF415684	similar to predicted protein	-	4e-65	At5g10400	histone H3	C.G.	S.X.	Please select
0.48	4e-78	289	1622440_at	CF372331	similar to predicted protein	-	5e-43	At5g10400	histone H3	C.G.	S.X.	Please select
0.39	6e-74	276	1618944_at	CF373843	similar to predicted protein	-	1e-47	At5g10400	histone H3	C.G.	S.X.	Please select
0.39	1e-34	145	1618914_at	CB972369	-	-	9e-55	At5g10400	histone H3	C.G.	S.X.	Please select
0.20	3e-29	127	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	C.G.	S.X.	Please select
0.33	2e-27	121	1608891_at	CF201205.1	-	-	3e-72	At4g40040	histone H3.2	C.G.	S.X.	Please select
0.23	2e-15	81	1612713_at	BQ797805	similar to histone H3	-	3e-57	At5g10980	histone H3	C.G.	S.X.	Please select
0.02	1e+0	32	1617082_a_at	CA809479	-	-	1e-20	At3g09770	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	1e-71	270	Arabidopsis thaliana	At5g10390	830903	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.55	2e-65	250	Glycine max	GmaAffx.12928.1.S1_at	BE823098	-	-	5e-40	At5g65360	histone H3	C.G.	S.X.	Please select
0.54	1e-79	295	Hordeum vulgare	Contig105_at	Contig105	-	-	7e-36	At1g09200	histone H3	C.G.	S.X.	Please select
0.54	3e-58	226	Oryza sativa	Os04g0419600	CR282432	-	Histone H3	5e-21	At1g09200	histone H3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.53	2e-46	186	Populus trichocarpa	Ptp.8020.1.A1_at	CK090666	-	-	8e-45	At3g27360	histone H3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	3e-63	242	Triticum aestivum	Ta.27101.7.S1_x_at	BJ221566	-	-	9e-45	At1g09200	histone H3	C.G.	S.X.	Please select
0.51	6e-53	206	Zea mays	Zm.16281.1.S1_at	BM378604	-	-	2e-18	At5g10980	histone H3	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage