CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1620256_at

Gene name sucrose transporter-like

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 77.3 1620256_at AF021808.1 sucrose transporter-like - 2e-29 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) S.X. H.G.
0.53 75.2 1610477_s_at CA818657 manganese superoxide dismutase - 4e-39 At3g10920 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) S.X. H.G.
0.50 72.7 1610574_at CF510554 hypothetical protein LOC100264544 - 4e-38 At4g33090 APM1 (AMINOPEPTIDASE M1) S.X. H.G.
0.44 64.1 1622694_at CB979125 hypothetical protein LOC100245090 - 2e-28 At3g12760 - S.X. H.G.
0.42 60.1 1609387_at CB978426 similar to FIP2 (FH protein interacting protein 2); voltage-gated potassium channel - 4e-48 At5g55000 FIP2 S.X. H.G.
0.21 24.0 1616039_at CF215123 hypothetical protein LOC100248352 - 1e-20 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 96.6 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-6 52 1622221_at AF021809.1 sucrose transporter-like - 7e-79 At2g02860 SUT2 (SUCROSE TRANSPORTER 2) C.G. S.X.
0.02 6e-2 38 1615697_at AF021810.1 sucrose transporter-like - 3e-16 At1g22710 SUC2 (SUCROSE-PROTON SYMPORTER 2) C.G. S.X.
0.01 1e+0 34 1620738_at CD711276 hypothetical protein LOC100247142 - 1e-4 At4g08280 - C.G. S.X.
0.01 1e+0 34 1616419_at CD798271 hypothetical protein LOC100244325 - 1e-1 At1g11440 - C.G. S.X.
0.01 1e+0 34 1614734_s_at BQ794477 hypothetical protein LOC100241422 - 4e-2 At5g13450 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative C.G. S.X.
0.01 1e+0 34 1614024_at CF211583 hypothetical protein LOC100245981 - 4e-2 At2g37930 unknown protein C.G. S.X.
0.01 1e+0 34 1612152_at CB347473 - - 4e+0 At3g08490 unknown protein C.G. S.X.
0.01 1e+0 34 1610841_at CD009354 - - 3e-1 At3g60770 40S ribosomal protein S13 (RPS13A) C.G. S.X.
0.01 1e+0 34 1606990_at CD009354 - - 3e-1 At3g60770 40S ribosomal protein S13 (RPS13A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-29 131 Arabidopsis thaliana At1g09960 837530 SUT4 (SUCROSE TRANSPORTER 4) low affinity (10mM) sucrose transporter in sieve elements (phloem) - - - C.G. S.X.
0.18 2e-36 155 Glycine max GmaAffx.77855.1.S1_at BI784806 - - 2e-8 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HVSMEh0088M04f_x_at HVSMEh0088M04f - - 6e+0 Atcg01120 - C.G. S.X.
0.11 1e-10 69 Oryza sativa Os12g0641400 AB091672.1 - Sucrose transporter 9e-18 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) C.G. S.X.
0.35 4e-53 210 Populus trichocarpa PtpAffx.201967.1.S1_at pmrna3927 sucrose proton symporter - 1e-30 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) C.G. S.X.
0.03 1e-2 42 Triticum aestivum TaAffx.25591.1.S1_at CA698030 - - 1e+0 At4g01100 ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) C.G. S.X.
0.12 2e-9 63 Zea mays Zm.17525.1.S1_at AY639018.1 sucrose transport protein 4 - 3e-13 At1g09960 SUT4 (SUCROSE TRANSPORTER 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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