Gene omics information

Query gene ID	1620254_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1620254_at	CD713450	-	-	2e+0	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	S.X.	H.G.	Please select
0.46	66.5	1613451_at	CD718832	-	-	8e-77	At3g24430	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	S.X.	H.G.	Please select
0.40	57.7	1610021_at	CB001944	-	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	S.X.	H.G.	Please select
0.36	50.7	1616091_at	CD715200	-	-	5e-71	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	S.X.	H.G.	Please select
0.19	20.9	1610991_at	CD718615	-	-	2e-6	At1g50020	unknown protein	S.X.	H.G.	Please select
0.06	6.8	1615690_at	CD715586	-	-	9e-10	At4g12910	scpl20 (serine carboxypeptidase-like 20)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	99.9	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
12.1	99.8	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
8.6	99.5	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
8.2	99.4	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.6	99.3	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
6.6	98.9	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
6.5	98.9	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
6.4	98.9	GSM147679	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	8
6.1	98.7	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
6.0	98.7	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1524	1616457_at	CD713450	hypothetical protein LOC100263581	-	2e+0	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	C.G.	S.X.	Please select
0.01	3e-2	38	1607032_s_at	CB345316	hypothetical protein LOC100250535	-	2e-18	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please select
0.02	1e-1	36	1611976_at	CF213700	hypothetical protein LOC100260879	-	4e-1	At2g20362	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	1621160_at	CF208890	-	-	2e-1	At5g24250	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622477_at	CF414040	hypothetical protein LOC100261452	-	4e-4	At3g22550	senescence-associated protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	1619178_at	CB349106	hypothetical protein LOC100257853 /// hypothetical protein LOC100252432	-	3e-8	At1g68300	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1618660_at	CB976465	-	-	2e+0	At2g19200	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616155_at	CA817917	-	-	4e+0	At5g53205	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g12990	831139	CLE40 (CLAVATA3/ESR-RELATED 40)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	3e-12	73	Glycine max	Gma.2348.3.S1_at	BU548288	-	-	1e+0	At5g51940	NRPB6A	C.G.	S.X.	Please select
0.03	9e-1	34	Hordeum vulgare	Contig13447_s_at	Contig13447	-	-	5e+0	At5g53205	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	36	Oryza sativa	Os03g0686500	AK099457.1	-	Hypothetical protein	2e+0	At1g07320	RPL4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-32	141	Populus trichocarpa	PtpAffx.469.1.A1_at	CV270102	-	-	3e-16	At1g01320	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e-4	46	Triticum aestivum	Ta.6248.1.S1_x_at	BJ252456	-	-	2e+0	At3g14170	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	ZmAffx.146.1.A1_at	AI667826	30S ribosomal protein S31	-	2e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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