Gene omics information

Query gene ID	1620234_at
Gene name	hypothetical protein LOC100255239
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.99	100.0	1620234_at	CA816993	hypothetical protein LOC100255239	-	4e+0	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	S.X.	H.G.	Please select
0.45	64.6	1619864_at	CD721451	hypothetical protein LOC100261391	-	4e-10	At3g09970	calcineurin-like phosphoesterase family protein	S.X.	H.G.	Please select
0.41	58.7	1614576_s_at	BM436293	hypothetical protein LOC100245884	-	1e-32	At3g23490	CYN (CYANASE)	S.X.	H.G.	Please select
0.38	53.6	1608972_at	BM437326	hypothetical protein LOC100267873	-	1e-1	At2g33270	ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3)	S.X.	H.G.	Please select
0.36	50.7	1609638_at	CB001362	-	-	3e+0	At2g28800	ALB3 (ALBINO 3)	S.X.	H.G.	Please select
0.36	50.7	1610825_at	CA813970	hypothetical protein LOC100244060	-	2e-2	At3g28070	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.34	46.8	1618020_x_at	CB972570	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.34	46.8	1622857_at	CB001399	-	-	5e-2	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	S.X.	H.G.	Please select
0.32	43.1	1616345_at	CB920761	hypothetical protein LOC100241649	-	1e-9	At4g30810	scpl29 (serine carboxypeptidase-like 29)	S.X.	H.G.	Please select
0.32	43.1	1612957_at	CF513158	hypothetical protein LOC100248904	-	3e-10	At1g22310	MBD8	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	98.5	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.2	97.1	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
3.4	95.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.2	94.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
3.0	94.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-107	387	1619413_at	CB344818	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.27	2e-107	387	1606923_s_at	CB344818	hypothetical protein LOC100255239	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.28	1e-105	381	1607822_at	CB345091	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	8e-2	36	1609533_at	CF568804	-	-	3e-13	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.03	3e-1	34	1622260_at	CD012303	-	-	2e+0	At3g30460	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1618470_at	CD012303	hypothetical protein LOC100253407	-	2e+0	At3g30460	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e-1	34	1613681_at	CF207171	hypothetical protein LOC100257193	-	6e-34	At4g18465	RNA helicase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1621981_at	CF204953.1	-	-	4e-1	At1g08710	F-box family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1614050_at	CB979311	hypothetical protein LOC100258052	-	2e-3	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g23050	821879	IAA7 (INDOLE-3-ACETIC ACID 7)	Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e+0	32	Glycine max	GmaAffx.85540.1.S1_at	BQ252831	-	-	2e-1	At3g15750	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	Contig24694_at	Contig24694	-	-	4e-1	At4g25280	adenylate kinase family protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os08g0499500	9636.m03939	-	-	5e-1	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	4e-10	65	Populus trichocarpa	PtpAffx.1761.2.S1_at	DN484457	hypothetical protein	-	5e-2	At1g75380	wound-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.57451.1.S1_at	CA628962	-	-	7e+0	At5g41071	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.2107.1.A1_at	AW267560	-	-	2e-2	At1g17080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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