Gene omics information

Query gene ID	1620214_at
Gene name	hypothetical protein LOC100252624
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1620214_at	CF372945	hypothetical protein LOC100252624	-	1e+0	At5g39950	ATTRX2 (THIOREDOXIN 2)	S.X.	H.G.	Please select
0.71	89.5	1612618_at	BQ792225	-	-	3e-7	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	87.9	1610276_s_at	CB346407	hypothetical protein LOC100244121	-	7e-6	At5g40370	glutaredoxin, putative	S.X.	H.G.	Please select
0.55	77.3	1616609_at	BM437555	hypothetical protein LOC100247612	-	4e-7	At5g42850	-	S.X.	H.G.	Please select
0.43	61.5	1617562_at	CF512363	hypothetical protein LOC100246010	-	5e-60	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	S.X.	H.G.	Please select
0.25	30.5	1617530_s_at	CA812136	hypothetical protein LOC100258272	-	3e-4	At3g12260	complex 1 family protein / LVR family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-2	38	1621058_at	CF205681.1	-	-	8e-2	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	C.G.	S.X.	Please select
0.03	2e-2	38	1612538_at	CB975523	-	-	3e-4	At2g25737	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	1617575_s_at	CD800130	hypothetical protein LOC100246832	-	1e-1	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	C.G.	S.X.	Please select
0.03	4e-1	34	1615413_at	CB972695	hypothetical protein LOC100260817	-	9e-14	At1g19440	KCS4 (3-KETOACYL-COA SYNTHASE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	1621610_at	CF372731	-	-	8e-6	At4g28240	wound-responsive protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	1617279_at	BQ796438	hypothetical protein LOC100251912	-	3e-2	At2g25700	ASK3 (ARABIDOPSIS SKP1-LIKE 3)	C.G.	S.X.	Please select
0.02	6e+0	30	1622256_at	CD715817	-	-	1e+0	At1g04180	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select
0.03	6e+0	30	1622188_at	CF373833	-	-	4e+0	At5g66800	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	30	1621614_at	CB837613	hypothetical LOC100249559	-	0	Atcg01000	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e+0	34	Arabidopsis thaliana	At5g39950	833992	ATTRX2 (THIOREDOXIN 2)	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	8e-12	71	Glycine max	Gma.571.1.S1_at	BU080946	-	-	3e+0	At5g39950	ATTRX2 (THIOREDOXIN 2)	C.G.	S.X.	Please select
0.04	2e-1	36	Hordeum vulgare	HM02O12u_at	HM02O12u	-	-	6e-1	At4g30280	XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os03g0800700	AK062383.1	-	Thioredoxin H-type 5 (TRX-H-5)	4e-1	At1g19730	ATTRX4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-4	48	Populus trichocarpa	PtpAffx.18908.2.S1_a_at	CK107534	thioredoxin h	-	3e-4	At3g51030	ATTRX1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e-2	40	Triticum aestivum	TaAffx.18372.1.S1_at	CA734494	-	-	3e-1	At1g19730	ATTRX4	C.G.	S.X.	Please select
0.04	9e-3	40	Zea mays	Zm.5600.2.A1_a_at	BM333382	thioredoxin H-type 5	-	2e+0	At1g19050	ARR7 (RESPONSE REGULATOR 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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