Gene omics information

Query gene ID	1620102_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1620102_at	CF514700	-	-	0	Atcg00540	-	S.X.	H.G.	Please select
0.36	50.7	1615731_at	CD801373	hypothetical protein LOC100264968	-	2e-12	At2g04030	CR88	S.X.	H.G.	Please select
0.36	50.7	1612526_s_at	CF514700	-	-	0	Atcg00540	-	S.X.	H.G.	Please select
0.22	25.6	1613137_at	BQ792300	-	-	0	Atcg00180	-	S.X.	H.G.	Please select
0.21	24.0	1612010_at	CB342277	hypothetical protein LOC100251079	-	1e+0	At4g23770	unknown protein	S.X.	H.G.	Please select
0.13	13.3	1622862_at	CB004075	-	-	1e-38	Atcg00440	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	98.6	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
5.4	98.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.3	98.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
5.0	98.0	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
4.9	97.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
4.8	97.8	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.7	97.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
4.4	97.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
4.1	96.9	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
4.0	96.7	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	5019	1615099_s_at	CB970583	hypothetical protein LOC100242764 /// similar to cytochrome f	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.98	0	5019	1612526_s_at	CF514700	-	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.98	0	5019	1612624_at	CB974055	similar to Os06g0598500	-	0	Atcg00540	-	C.G.	S.X.	Please select
0.11	0	1007	1610711_s_at	CF606982	-	-	4e+0	At4g28085	unknown protein	C.G.	S.X.	Please select
0.08	0	714	1621322_at	CB973195	-	-	2e-121	Atcg00580	-	C.G.	S.X.	Please select
0.05	2e-113	410	1611247_s_at	CF206748.1	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	C.G.	S.X.	Please select
0.05	2e-107	391	1617652_s_at	CF517834	hypothetical protein LOC100249964	-	3e-2	At3g63310	glutamate binding	C.G.	S.X.	Please select
0.07	2e-54	214	1616902_at	CB340126	-	-	6e-2	At3g16120	dynein light chain, putative	C.G.	S.X.	Please select
0.03	2e-54	214	1606704_s_at	CF200937.1	-	-	2e-103	Atcg00580	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	0	1184	Arabidopsis thaliana	Atcg00540	-	-	Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-149	533	Glycine max	Gma.17706.1.A1_at	BI943579	-	-	8e-64	Atcg00500	-	C.G.	S.X.	Please select
0.05	1e-35	153	Hordeum vulgare	HZ40F21r_at	HZ40F21r	-	-	5e-32	Atcg00490	-	C.G.	S.X.	Please select
0.18	0	882	Oryza sativa	OsAffx.32260.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	0	1257	Populus trichocarpa	PtpAffx.219022.1.S1_at	pmrna34812	-	-	0	Atcg00540	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	9e-91	337	Triticum aestivum	TaAffx.128414.52.S1_at	BE213556	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit	-	8e-86	Atcg00490	-	C.G.	S.X.	Please select
0.17	0	866	Zea mays	ZmAffx.1467.1.S1_at	11990232-34	-	-	4e-125	Atcg00540	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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