Gene omics information

Query gene ID	1620097_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1620097_x_at	CF202968.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	S.X.	H.G.	Please select
0.91	98.8	1610332_x_at	CF204509.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	S.X.	H.G.	Please select
0.77	92.3	1607877_x_at	CF202836.1	-	-	3e+1	Atcg01250	-	S.X.	H.G.	Please select
0.67	87.9	1611705_s_at	CF202744.1	-	-	1e+1	At5g40700	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	S.X.	H.G.	Please select
0.38	53.6	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.9	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
4.9	97.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
4.9	97.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
4.8	97.8	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
4.6	97.6	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
4.5	97.5	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
4.4	97.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
4.4	97.3	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
4.2	97.1	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
4.2	97.1	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	2e-29	125	1610332_x_at	CF204509.1	-	-	8e-1	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.18	4e-28	121	1619521_at	CD799418	-	-	1e+0	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.59	6e-27	117	1610226_at	CF201343.1	-	-	4e+0	At1g72430	auxin-responsive protein-related	C.G.	S.X.	Please select
0.57	6e-27	117	1609928_x_at	CF203051.1	-	-	3e-1	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.59	6e-27	117	1607059_x_at	CF201343.1	-	-	4e+0	At1g72430	auxin-responsive protein-related	C.G.	S.X.	Please select
0.58	1e-24	109	1615981_at	CF202148.1	-	-	3e-1	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.58	1e-24	109	1614927_x_at	CF202148.1	-	-	3e-1	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.33	1e-15	79	1615518_at	CB346390	-	-	6e+0	Atcg01270	-	C.G.	S.X.	Please select
0.38	5e-15	77	1619163_x_at	CF204499.1	-	-	6e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-1	32	Arabidopsis thaliana	At3g08000	819991	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	2e-33	141	Glycine max	GmaAffx.89671.1.A1_at	CK605541	-	-	2e+0	At3g08000	RNA-binding protein, putative	C.G.	S.X.	Please select
0.52	4e-26	115	Hordeum vulgare	HVSMEc0009K16f_s_at	HVSMEc0009K16f	-	-	5e+0	At1g28590	lipase, putative	C.G.	S.X.	Please select
0.10	1e-25	115	Oryza sativa	Os05g0186000	AK058675.1	-	-	1e+0	At1g15220	CCMH	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e+1	28	Populus trichocarpa	PtpAffx.219647.1.S1_at	pmrna35611	hypothetical protein	-	6e+0	At3g46170	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	2e-26	117	Triticum aestivum	TaAffx.128418.75.S1_at	BJ260471	-	-	3e-1	At3g61560	reticulon family protein (RTNLB6)	C.G.	S.X.	Please select
0.28	8e-27	117	Zea mays	ZmAffx.1135.1.S1_at	AW331161	-	-	1e+1	At4g08670	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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