Gene omics information

Query gene ID	1620076_s_at
Gene name	hypothetical protein LOC100254960
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1620076_s_at	CA809762	hypothetical protein LOC100254960	-	6e-15	At1g15270	-	S.X.	H.G.	Please select
0.44	64.1	1607665_a_at	CB978733	hypothetical protein LOC100265617	-	1e-47	At3g55005	TON1B (tonneau 1b)	S.X.	H.G.	Please select
0.44	64.1	1620798_s_at	BQ800340	hypothetical protein LOC100251175	-	1e-5	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.40	57.7	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.36	50.7	1608087_s_at	CF568810	glyceraldehyde-3-phosphate dehydrogenase	-	2e-103	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	S.X.	H.G.	Please select
0.19	20.9	1616420_at	CF515326	hypothetical protein LOC100244821	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436374	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	8e-21	99	1619123_at	CB339594	-	-	9e-1	At1g10970	ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)	C.G.	S.X.	Please select
0.09	2e-18	91	1610355_at	CB344032	-	-	9e-1	At1g10970	ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)	C.G.	S.X.	Please select
0.10	2e-18	91	1609617_at	CB345864	-	-	4e-2	At3g49845	-	C.G.	S.X.	Please select
0.09	2e-18	91	1607564_at	CB350061	UPF0497 membrane protein 4	-	1e+1	At5g41530	-	C.G.	S.X.	Please select
0.09	2e-18	91	1606761_s_at	CB350061	UPF0497 membrane protein 4	-	1e+1	At5g41530	-	C.G.	S.X.	Please select
0.09	5e-16	83	1619216_at	CB349803	similar to sterol 22-desaturase	-	2e-1	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.11	5e-16	83	1616416_at	CB349840	hypothetical protein LOC100251243	-	7e+0	At3g43740	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.09	5e-16	83	1615837_at	CB340823	-	-	7e-1	At4g10240	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.10	5e-16	83	1613246_at	CB339467	-	-	2e+0	At2g43871	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	6e-15	81	Arabidopsis thaliana	At1g15270	838094	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	8e-12	71	Glycine max	GmaAffx.89368.1.A1_s_at	CK606550	-	-	4e-19	At1g15270	-	C.G.	S.X.	Please select
0.18	1e-14	79	Hordeum vulgare	Contig1752_s_at	Contig1752	-	-	3e-7	At1g15270	-	C.G.	S.X.	Please select
0.22	1e-26	121	Oryza sativa	Os.12237.2.S1_a_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	3e-17	89	Populus trichocarpa	Ptp.2263.1.S1_s_at	CV272257	hypothetical protein	-	2e-27	At1g15270	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	2e-15	83	Triticum aestivum	Ta.17131.1.S1_at	CA618076	-	-	1e-6	At1g15270	-	C.G.	S.X.	Please select
0.23	1e-23	109	Zea mays	Zm.1546.3.A1_at	CK369824	-	-	1e-6	At1g15270	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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