Gene omics information

Query gene ID	1620073_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1620073_at	CB002740	-	-	1e+0	At2g23940	unknown protein	S.X.	H.G.	Please select
0.29	37.7	1621043_at	CF609414	-	-	2e-15	At4g36690	ATU2AF65A	S.X.	H.G.	Please select
0.04	5.2	1614579_at	CB004423	similar to importin-related	-	1e-3	At1g12930	importin-related	S.X.	H.G.	Please select
0.04	5.2	1612032_at	BQ797311	hypothetical protein LOC100251875	-	3e-1	At2g20208	LCR60 (Low-molecular-weight cysteine-rich 60)	S.X.	H.G.	Please select
0.03	4.2	1613703_at	BQ800381	hypothetical protein LOC100241006	-	5e-13	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	S.X.	H.G.	Please select
0.03	4.2	1616408_a_at	CA809416	hypothetical protein LOC100251641	-	2e+0	At2g14935	LCR40 (Low-molecular-weight cysteine-rich 40)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.5	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.0	96.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
3.8	96.4	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.2	94.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147706	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	35
3.0	94.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.9	93.8	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1618628_at	CD800397	hypothetical protein LOC100244382 /// similar to Os03g0235100	-	3e-17	At1g61150	-	C.G.	S.X.	Please select
0.02	3e-1	34	1615628_at	CB345697	hypothetical protein LOC100244782	-	5e-1	At4g10080	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1612026_at	CB972335	hypothetical protein LOC100261221	-	2e+0	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	C.G.	S.X.	Please select
0.02	3e-1	34	1608968_at	CB342367	hypothetical protein LOC100251348	-	7e-22	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1619890_at	CD802467	hypothetical protein LOC100245743	-	8e-3	At3g22090	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1614332_s_at	CA814568	hypothetical protein LOC100265533	-	4e-4	At2g28710	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1622042_at	CD721714	-	-	1e+0	At1g41875	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1618177_at	CF511456	hypothetical protein LOC100243389	-	9e-40	At2g07050	CAS1 (cycloartenol synthase 1)	C.G.	S.X.	Please select
0.02	5e+0	30	1616777_at	CB975871	hypothetical protein LOC100259075	-	2e-22	At3g51040	RTH (RTE1-HOMOLOG)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g23940	816926	unknown protein	F:unknown;P:unknown;C:plasma membrane;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.4724.1.S1_at	BI701093	-	-	1e-15	At1g02810	pectinesterase family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	Contig20601_at	Contig20601	-	-	2e+0	At4g23910	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	36	Oryza sativa	Os03g0829000	AK071107.1	-	Fumarylacetoacetate (FAA) hydrolase family protein	1e-1	At4g15940	fumarylacetoacetate hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.213279.1.S1_at	pmrna25971	hypothetical protein	-	7e+0	At5g47100	CBL9	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.31077.1.S1_at	CA619701	-	-	1e+1	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.18298.1.A1_at	CO531061	senescence-associated protein	-	1e+0	At3g54130	josephin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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