Gene omics information

Query gene ID	1620069_s_at
Gene name	hypothetical protein LOC100248991
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1620069_s_at	CB969496	hypothetical protein LOC100248991	-	9e-51	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	S.X.	H.G.	Please select
0.91	98.8	1610560_at	BQ797613	hypothetical protein LOC100258347	-	7e-52	At3g47370	40S ribosomal protein S20 (RPS20B)	S.X.	H.G.	Please select
0.91	98.8	1613860_s_at	CF512506	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	S.X.	H.G.	Please select
0.73	90.8	1610095_s_at	CF516594	hypothetical protein LOC100257471	-	9e-49	At5g23900	60S ribosomal protein L13 (RPL13D)	S.X.	H.G.	Please select
0.73	90.8	1608096_at	CB978907	hypothetical protein LOC100264515	-	6e-59	At5g39850	40S ribosomal protein S9 (RPS9C)	S.X.	H.G.	Please select
0.67	87.9	1610092_at	BQ794603	hypothetical protein LOC100250286	-	2e-18	At5g18380	40S ribosomal protein S16 (RPS16C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1622132_at	CF204856.1	-	-	2e+0	At1g33070	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select
0.02	1e+0	32	1614835_at	BQ799710	hypothetical protein LOC100254702	-	4e-13	At4g29870	-	C.G.	S.X.	Please select
0.03	1e+0	32	1612174_s_at	CD003870	-	-	7e-9	At5g23790	AtGolS5 (Arabidopsis thaliana galactinol synthase 5)	C.G.	S.X.	Please select
0.02	1e+0	32	1611515_s_at	CB343423	hypothetical protein LOC100241224	-	3e-24	At3g16140	PSAH-1 (photosystem I subunit H-1)	C.G.	S.X.	Please select
0.03	1e+0	32	1608229_s_at	CD003870	hypothetical protein LOC100244167	-	7e-9	At5g23790	AtGolS5 (Arabidopsis thaliana galactinol synthase 5)	C.G.	S.X.	Please select
0.03	1e+0	32	1606691_at	CF403956	-	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	5e+0	30	1620360_at	CF208277	hypothetical protein LOC100262741	-	2e-158	At2g23070	casein kinase II alpha chain, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1620278_at	CD798169	hypothetical protein LOC100255447	-	2e-4	At4g13620	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	5e+0	30	1620284_at	CA817004	hypothetical protein LOC100249470	-	1e-17	At4g35220	cyclase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	9e-51	200	Arabidopsis thaliana	At3g61110	825283	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	Arabidopsis ribosomal protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	1e-53	210	Glycine max	Gma.6612.1.S1_at	BE823287	-	-	2e-48	At2g45710	40S ribosomal protein S27 (RPS27A)	C.G.	S.X.	Please select
0.24	5e-32	137	Hordeum vulgare	Contig1367_at	Contig1367	-	-	8e-30	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select
0.23	4e-39	163	Oryza sativa	Os02g0478700	AK099723.1	-	Ribosomal protein S27 (AT3g61110/T27I15_200)	4e-19	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	1e-65	250	Populus trichocarpa	Ptp.2117.1.S1_s_at	CV247380	-	-	3e-32	At5g47930	40S ribosomal protein S27 (RPS27D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	2e-27	123	Triticum aestivum	Ta.20627.1.S1_at	CA486446	-	-	8e-23	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select
0.18	4e-26	117	Zea mays	Zm.3475.1.S1_at	CF002596	ribosomal protein S27	-	1e-22	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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