Gene omics information

Query gene ID	1620050_at
Gene name	hypothetical protein LOC100244027
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1620050_at	CB009432	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	S.X.	H.G.	Please select
0.67	87.9	1615374_at	CB911656	hypothetical protein LOC100241955	-	8e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	S.X.	H.G.	Please select
0.60	81.9	1616147_at	CF404954	hypothetical protein LOC100243192	-	2e-6	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	S.X.	H.G.	Please select
0.50	72.7	1612185_at	CB008768	hypothetical protein LOC100245556	-	3e-10	At5g66460	(1-4)-beta-mannan endohydrolase, putative	S.X.	H.G.	Please select
0.50	72.7	1616279_at	BQ796307	hypothetical protein LOC100260173	-	1e-1	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	S.X.	H.G.	Please select
0.27	34.0	1610123_at	CB009127	hypothetical protein LOC100268010	-	1e+0	At4g15715	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.2	99.9	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
13.1	99.8	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
13.1	99.8	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
11.8	99.8	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
11.4	99.7	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.8	99.7	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.0	99.6	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.9	99.6	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.7	99.6	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.6	99.6	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	5e-88	323	1616957_s_at	CA808953	hypothetical protein LOC100264047	-	9e-1	At3g26140	glycosyl hydrolase family 5 protein / cellulase family protein	C.G.	S.X.	Please select
0.26	9e-53	206	1618680_at	CF513228	hypothetical protein LOC100245394	-	4e-3	At3g02750	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.02	2e-1	36	1607436_at	CF568907	-	-	5e-24	At3g60820	PBF1	C.G.	S.X.	Please select
0.01	3e+0	32	1621552_at	BM437510	hypothetical protein LOC100249249	-	9e-27	At3g24500	MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)	C.G.	S.X.	Please select
0.02	3e+0	32	1619846_at	CB981983	hypothetical protein LOC100247893	-	3e-11	At2g39140	SVR1 (SUPPRESSOR OF VARIEGATION 1)	C.G.	S.X.	Please select
0.02	3e+0	32	1618988_at	CB008145	-	-	5e-6	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select
0.02	3e+0	32	1616271_at	CD713125	-	-	5e-3	At5g01100	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1615185_at	CB008145	-	-	5e-6	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select
0.02	3e+0	32	1612473_at	CD713125	-	-	5e-3	At5g01100	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-5	52	Arabidopsis thaliana	At5g17500	831616	glycosyl hydrolase family 5 protein / cellulase family protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BFPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-3	46	Glycine max	Gma.17300.1.A1_at	AW350946	-	-	1e-2	At5g64460	-	C.G.	S.X.	Please select
0.02	8e-2	38	Hordeum vulgare	Contig5609_at	Contig5609	-	-	5e+0	At2g01905	CYCJ18 (CYCLIN J18)	C.G.	S.X.	Please select
0.01	5e-3	44	Oryza sativa	Os02g0596200	AK109830.1	-	Glycoside hydrolase, family 5 protein	6e-5	At3g26130	glycosyl hydrolase family 5 protein / cellulase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-6	54	Populus trichocarpa	PtpAffx.136046.1.A1_at	CK091212	hypothetical protein	-	6e+0	At5g53592	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	4e-2	40	Triticum aestivum	TaAffx.36659.1.A1_at	BJ321791	-	-	4e+0	Atmg01410	-	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.7734.1.A1_at	BM334368	hypothetical protein LOC100193498	-	3e-5	At5g26170	WRKY50	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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