Gene omics information

Query gene ID 1620045_at
Gene name similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase
Organism Vitis vinifera


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6787.91620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)S.X.H.G.
0.8093.61617420_x_atCF202439.1--2e-20At4g1810060S ribosomal protein L32 (RPL32A)S.X.H.G.
0.4464.11610018_atCF514810hypothetical protein LOC100246937-4e-10At1g43640AtTLP5 (TUBBY LIKE PROTEIN 5)S.X.H.G.
0.3345.71616920_atCF512566hypothetical protein LOC100251933-2e-12At5g05610AL1 (ALFIN-LIKE 1)S.X.H.G.
0.3141.31611002_s_atCB969717hypothetical protein LOC100246998-6e-13At3g10210-S.X.H.G.
0.2734.01616366_atCF215144hypothetical protein LOC100251921-3e-21At3g53500zinc knuckle (CCHC-type) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.796.2GSM436405V. riparia (VR, PI588259) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
3.696.0GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancy
3.595.7GSM436394V. riparia (VR, PI588259) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancy
3.395.2GSM436407V. riparia (VR, PI588259) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
3.294.9GSM436403V. riparia (VR, PI588259) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancy
3.294.9GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
3.194.6GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancy
3.194.6GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
3.094.2GSM436404V. riparia (VR, PI588259) LD, 15h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
2.893.4GSM436395V. riparia (VR, PI588259) LD, 15h 7 days - rep2GSE17502Photoperiod regulation of grape bud dormancy
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-4461617779_atCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.031e-4461615991_s_atCF404409hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.031e-1361620139_atCB914494--1e-9At3g07170sterile alpha motif (SAM) domain-containing proteinC.G.S.X.
0.021e-1361619531_atCB971939hypothetical protein LOC100241984-2e-3At1g47500ATRBP47C' (RNA-binding protein 47C')C.G.S.X.
0.031e-1361616337_atCB914494hypothetical protein LOC100246803-1e-9At3g07170sterile alpha motif (SAM) domain-containing proteinC.G.S.X.
0.031e-1361615219_atCB982054hypothetical protein LOC100242702-1e+0At3g57450unknown proteinC.G.S.X.
0.025e-1341621685_atCF208818hypothetical protein LOC100264809-2e+0At5g40330MYB23 (MYB DOMAIN PROTEIN 23)C.G.S.X.
0.035e-1341619747_atCF372623hypothetical protein LOC100247254-7e-5At2g22080unknown proteinC.G.S.X.
0.025e-1341617456_atCD717807--9e-8Atmg01060-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.234e-38159Arabidopsis thalianaAt5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.---C.G.S.X.
0.421e-51204Glycine maxGma.12683.1.S1_atAW100064--5e-28At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.086e-857Hordeum vulgareContig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.174e-49196Oryza sativaOs08g0344100AK111861.1-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.446e-72272Populus trichocarpaPtpAffx.32882.1.A1_atCK096564histone deacetylase-3e-29At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.088e-961Triticum aestivumTa.23826.1.S1_atBT009381.1Histone deacetylase HDAC3-3e-41At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.175e-39161Zea maysZm.419.1.S1_atAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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