CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619996_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1619996_at BM437454 - - 4e-29 At2g47490 mitochondrial substrate carrier family protein S.X. H.G.
0.64 84.7 1617487_at CD720403 - - 2e-18 At1g57590 carboxylesterase S.X. H.G.
0.31 41.3 1622228_at CF568837 - - 4e-68 At1g52740 HTA9 (HISTONE H2A PROTEIN 9) S.X. H.G.
0.13 13.3 1613478_at CF609114 hypothetical protein LOC100245702 - 2e-14 At2g19570 CDA1 (CYTIDINE DEAMINASE 1) S.X. H.G.
0.13 13.3 1617934_at BM437104 - - 1e-76 At2g34590 transketolase family protein S.X. H.G.
0.12 12.1 1622053_at BQ798028 - - 7e-8 At5g11060 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) S.X. H.G.
0.12 12.1 1620794_at CF568783 - - 3e-13 At4g15000 60S ribosomal protein L27 (RPL27C) S.X. H.G.
0.11 11.3 1610105_at CF206332.1 - - 2e-77 At1g52280 AtRABG3d (Arabidopsis Rab GTPase homolog G3d) S.X. H.G.
0.09 9.4 1621568_at CF415414 hypothetical protein LOC100252433 - 1e+0 At2g07721 unknown protein S.X. H.G.
0.09 9.4 1616747_at CF205411.1 - - 1e-15 At4g09012 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 98.8 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.9 97.9 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.8 96.4 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19
3.5 95.7 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
3.4 95.5 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1550 1613578_s_at BM437454 hypothetical protein LOC100258843 - 4e-29 At2g47490 mitochondrial substrate carrier family protein C.G. S.X.
0.02 2e+0 32 1622131_at CF207024.1 - - 9e-2 At1g76520 auxin efflux carrier family protein C.G. S.X.
0.02 2e+0 32 1620583_s_at CF213679 hypothetical protein LOC100247041 - 5e-1 At4g24231 unknown protein C.G. S.X.
0.01 2e+0 32 1619616_at BQ798767 hypothetical protein LOC100254733 - 3e-9 At2g29500 17.6 kDa class I small heat shock protein (HSP17.6B-CI) C.G. S.X.
0.02 2e+0 32 1619120_at CB340081 hypothetical protein LOC100244913 - 3e-35 At3g55240 - C.G. S.X.
0.02 2e+0 32 1618743_at CB834442 - - 5e+0 At5g57400 unknown protein C.G. S.X.
0.02 2e+0 32 1616162_s_at CF517760 - - 1e+0 At5g19257 unknown protein C.G. S.X.
0.02 2e+0 32 1614940_at CB834442 - - 5e+0 At5g57400 unknown protein C.G. S.X.
0.03 2e+0 32 1607640_at CF215061 hypothetical protein LOC100249595 - 1e-19 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 4e-29 129 Arabidopsis thaliana At2g47490 819362 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV - - - C.G. S.X.
0.48 1e-72 274 Glycine max Gma.6944.1.S1_at BI970468 - - 2e-31 At2g47490 mitochondrial substrate carrier family protein C.G. S.X.
0.04 3e-6 52 Hordeum vulgare Contig19303_at Contig19303 - - 4e-1 At2g47490 mitochondrial substrate carrier family protein C.G. S.X.
0.12 9e-13 75 Oryza sativa Os05g0357200 AK072064.1 - Mitochondrial substrate carrier family protein 5e-27 At2g47490 mitochondrial substrate carrier family protein C.G. S.X.
0.48 1e-72 274 Populus trichocarpa PtpAffx.47750.1.A1_at CV277957 hypothetical protein - 2e-24 At2g47490 mitochondrial substrate carrier family protein C.G. S.X.
0.11 7e-3 42 Triticum aestivum Ta.15857.1.S1_at CA498834 - - 1e-6 At2g47490 mitochondrial substrate carrier family protein C.G. S.X.
0.05 5e-5 48 Zea mays Zm.9717.1.A1_at BM336547 hypothetical protein LOC100192773 - 9e-5 At2g47490 mitochondrial substrate carrier family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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