CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619981_at

Gene name similar to MtN19-like protein

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 84.3 1619981_at CB004603 similar to MtN19-like protein - 8e-7 At5g61820 - S.X. H.G.
0.71 89.5 1615805_at CD801749 - - 1e+0 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) S.X. H.G.
0.55 77.3 1620568_at BQ799876 - - 4e-15 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) S.X. H.G.
0.48 68.8 1608251_at CB969689 similar to Glutamate decarboxylase - 5e+0 At4g25950 VATG3 (vacuolar ATP synthase G3) S.X. H.G.
0.44 64.1 1618125_at BQ798742 hypothetical protein LOC100261276 - 9e-23 At2g36580 pyruvate kinase, putative S.X. H.G.
0.27 34.0 1608802_s_at BQ793447 hypothetical protein LOC100268002 - 3e-29 At5g45020 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 99.7 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.7 99.0 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.6 98.4 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.6 98.4 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5 98.4 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5 98.4 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2 98.2 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.8 97.8 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.5 97.5 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 1620534_at BQ799259 hypothetical protein LOC100266322 - 7e-39 At5g11950 protein homodimerization C.G. S.X.
0.01 9e-1 34 1619413_at CB344818 - - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.01 9e-1 34 1618816_at BQ796222 hypothetical protein LOC100256132 - 6e-6 At1g05780 unknown protein C.G. S.X.
0.01 9e-1 34 1616284_at CF207496 hypothetical protein LOC100250368 - 1e-44 At5g03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein C.G. S.X.
0.01 9e-1 34 1614078_at BQ799834 hypothetical protein LOC100254432 - 7e-31 At2g37570 SLT1 (sodium- and lithium-tolerant 1) C.G. S.X.
0.01 9e-1 34 1613160_s_at BQ799834 hypothetical protein LOC100254432 - 7e-31 At2g37570 SLT1 (sodium- and lithium-tolerant 1) C.G. S.X.
0.01 9e-1 34 1606923_s_at CB344818 hypothetical protein LOC100255239 - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.01 4e+0 32 1622260_at CD012303 - - 2e+0 At3g30460 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 4e+0 32 1622202_at CD721645 hypothetical LOC100243631 - 3e-1 At3g25270 nucleic acid binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-7 56 Arabidopsis thaliana At5g61820 836304 - F:molecular_function unknown;P:biological_process unknown;C:vacuole;PO - - - C.G. S.X.
0.21 1e-21 105 Glycine max GmaAffx.78983.1.S1_at BU765177 - - 8e-1 At5g43480 unknown protein C.G. S.X.
0.03 4e-1 36 Hordeum vulgare Contig3341_at Contig3341 - - 3e+0 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) C.G. S.X.
0.07 6e-3 44 Oryza sativa Os08g0538600 AK067831.1 - - 9e-1 At5g61820 - C.G. S.X.
0.29 6e-30 133 Populus trichocarpa PtpAffx.81816.1.S1_at CV272294 hypothetical protein - 9e+0 At5g44220 F-box family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.58648.1.S1_at CA617613 - - 7e-42 At1g10950 endomembrane protein 70, putative C.G. S.X.
0.02 9e-2 38 Zea mays Zm.2146.1.A1_at AW287813 - - 5e+0 At5g35475 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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