CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619977_at

Gene name hypothetical protein LOC100251508

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1619977_at BQ794993 hypothetical protein LOC100251508 - 3e-27 At2g22540 SVP (SHORT VEGETATIVE PHASE) S.X. H.G.
0.83 94.6 1608722_at BQ792556 hypothetical protein LOC100252840 - 1e-1 At5g40630 ubiquitin family protein S.X. H.G.
0.67 87.9 1611914_at BQ796358 hypothetical protein LOC100261398 - 2e+0 At4g14660 NRPE7 S.X. H.G.
0.60 81.9 1612994_at CF415215 hypothetical protein LOC100255224 - 4e-17 At1g74520 ATHVA22A S.X. H.G.
0.57 79.8 1619047_at CD012487 hypothetical protein LOC100253286 - 7e-11 At3g16980 NRPB9A S.X. H.G.
0.27 34.0 1612954_at CF404452 hypothetical protein LOC100257012 - 4e-1 At3g55070 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 97.5 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436415 V. riparia (VR, PI588259) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-12 71 1610233_at CF201218.1 hypothetical protein LOC100260900 - 1e-4 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.03 9e-3 40 1621827_at CF373383 similar to flowering locus C-like MADS-box protein - 4e-11 At2g45650 AGL6 (AGAMOUS-LIKE 6) C.G. S.X.
0.05 9e-3 40 1614965_at BQ792730 MADS-box protein 4 - 6e-36 At1g24260 SEP3 (SEPALLATA3) C.G. S.X.
0.02 6e-1 34 1614954_at CB344768 - - 6e-2 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) C.G. S.X.
0.02 6e-1 34 1610971_at CB344981 - - 4e+0 At4g20290 unknown protein C.G. S.X.
0.01 6e-1 34 1609899_at BQ795001 similar to mitochondrial 28S ribosomal protein S29-related - 3e-34 At1g16870 mitochondrial 28S ribosomal protein S29-related C.G. S.X.
0.02 2e+0 32 1621239_at CF517123 - - 2e+0 At4g13266 unknown protein C.G. S.X.
0.01 2e+0 32 1620502_at CF208333 hypothetical protein LOC100256223 - 1e-14 At1g56140 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.02 9e+0 30 1622260_at CD012303 - - 2e+0 At3g30460 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-27 123 Arabidopsis thaliana At2g22540 816787 SVP (SHORT VEGETATIVE PHASE) Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter. - - - C.G. S.X.
0.17 1e-20 101 Glycine max Gma.6381.1.S1_at BQ610438 - - 9e-5 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.09 1e-6 54 Hordeum vulgare Contig4517_at Contig4517 - - 1e-7 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.10 2e-8 61 Oryza sativa OsAffx.12789.1.A1_at - - - 0 C.G. S.X.
0.46 2e-72 274 Populus trichocarpa PtpAffx.4750.1.S1_at AJ767836 hypothetical protein - 3e-40 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.08 4e-11 69 Triticum aestivum Ta.6743.1.S1_at BJ320266 MADS-box transcription factor TaAGL11 - 4e-11 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.09 2e-4 46 Zea mays Zm.14824.1.S1_at AJ430693.1 hypothetical protein LOC100217247 /// m26 protein - 5e-1 At2g16600 ROC3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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