CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1619976_at

Gene name hypothetical protein LOC100266753

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1619976_at CF604790 hypothetical protein LOC100266753 - 4e-19 At1g20823 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.15 15.6 1612034_at CF207955 hypothetical protein LOC100265881 - 5e-1 At5g62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein S.X. H.G.
0.14 14.4 1608277_at CA816391 hypothetical protein LOC100249980 - 3e-75 At4g12230 esterase/lipase/thioesterase family protein S.X. H.G.
0.13 13.3 1617788_at CF207517 hypothetical protein LOC100243898 - 2e-2 At4g18000 unknown protein S.X. H.G.
0.09 9.4 1615479_at CA815857 hypothetical protein LOC100250632 - 2e-5 At1g26690 emp24/gp25L/p24 family protein S.X. H.G.
0.08 8.5 1612066_at CF607715 beclin 1 protein - 5e-48 At3g61710 autophagy protein Apg6 family S.X. H.G.
0.05 6.0 1607571_at CF373263 hypothetical protein LOC100259830 - 1e-13 At3g50845 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 97.5 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3 97.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5 95.7 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-6 52 1619965_at BQ800438 hypothetical protein LOC100260977 - 2e-3 At1g20823 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 5e-3 40 1619456_at CF404419 hypothetical protein LOC100251413 - 8e-12 At3g14310 ATPME3 C.G. S.X.
0.05 5e-3 40 1615208_at CF603150 hypothetical protein LOC100255070 - 3e-19 At5g22850 aspartyl protease family protein C.G. S.X.
0.02 5e-3 40 1614958_at CB347627 hypothetical protein LOC100241674 - 2e-6 At5g13050 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) C.G. S.X.
0.04 2e-2 38 1609893_at BQ798416 hypothetical protein LOC100266028 - 6e-3 At2g18420 - C.G. S.X.
0.03 3e-1 34 1620498_at BM436882 - - 2e-2 At1g79770 unknown protein C.G. S.X.
0.03 3e-1 34 1618827_at CD004578 hypothetical protein LOC100243704 - 1e-1 At1g01360 unknown protein C.G. S.X.
0.02 3e-1 34 1618667_s_at CB339921 similar to predicted protein - 4e-20 At5g46020 unknown protein C.G. S.X.
0.03 3e-1 34 1616739_at BM436882 hypothetical protein LOC100257759 - 2e-2 At1g79770 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 4e-19 95 Arabidopsis thaliana At1g20823 838674 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV - - - C.G. S.X.
0.36 8e-21 101 Glycine max GmaAffx.62799.1.S1_at BF069889 - - 8e-2 At1g20823 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.11 6e-13 73 Hordeum vulgare Contig26469_at Contig26469 - - 2e+0 At2g47560 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.18 2e-13 77 Oryza sativa Os02g0686100 9630.m04476 - Zn-finger, RING domain containing protein 1e+0 At5g01880 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.26 5e-13 75 Populus trichocarpa PtpAffx.120421.1.A1_at CV264502 hypothetical protein - 2e-18 At1g76410 ATL8 C.G. S.X.
0.11 2e-8 59 Triticum aestivum TaAffx.3070.1.S1_at CK161607 - - 1e-1 At1g20823 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 8e-3 40 Zea mays Zm.19057.1.A1_at CO525209 - - 4e-2 At5g05280 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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