Gene omics information

Query gene ID	1619955_at
Gene name	hypothetical protein LOC100265296
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	85.0	1619955_at	CF511247	hypothetical protein LOC100265296	-	1e-5	At3g15970	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	S.X.	H.G.	Please select
0.50	72.7	1614617_at	CD801865	hypothetical protein LOC100251323	-	3e-7	At4g00752	UBX domain-containing protein	S.X.	H.G.	Please select
0.40	57.7	1616844_at	CA812043	hypothetical protein LOC100257380	-	1e-20	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please select
0.36	50.7	1622553_a_at	BQ797594	hypothetical protein LOC100267624	-	1e-34	At5g18190	protein kinase family protein	S.X.	H.G.	Please select
0.35	48.5	1606906_at	CF212676	hypothetical LOC100257222	-	2e-1	At1g15360	SHN1 (SHINE 1)	S.X.	H.G.	Please select
0.32	43.1	1619247_at	CB971481	hypothetical protein LOC100256712	-	7e-11	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please select
0.30	39.4	1619638_at	CF606242	hypothetical protein LOC100243143	-	1e-1	At3g19900	unknown protein	S.X.	H.G.	Please select
0.25	30.5	1620279_at	CB923067	hypothetical protein LOC100255680	-	1e+0	At3g06870	proline-rich family protein	S.X.	H.G.	Please select
0.18	19.4	1622769_at	BQ793816	hypothetical protein LOC100243302	-	1e-22	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.18	19.4	1607154_at	CA812228	hypothetical protein LOC100266477	-	6e-5	At5g18420	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM436374	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	34	1622749_at	CD715377	hypothetical protein LOC100253671	-	8e-1	At5g09978	PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)	C.G.	S.X.	Please select
0.02	7e-1	34	1622181_at	CA808206	hypothetical protein LOC100253653	-	3e-19	At1g14410	WHY1 (WHIRLY 1)	C.G.	S.X.	Please select
0.02	7e-1	34	1610076_at	CD715377	-	-	8e-1	At5g09978	PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)	C.G.	S.X.	Please select
0.02	7e-1	34	1609770_at	CF510595	hypothetical protein LOC100244598	-	2e-1	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	C.G.	S.X.	Please select
0.02	7e-1	34	1607299_at	CA817215	-	-	4e+0	At3g28321	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	1622788_at	CB920325	hypothetical protein LOC100262286	-	1e-1	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	C.G.	S.X.	Please select
0.01	3e+0	32	1622491_at	CF516970	-	-	2e+0	At2g02510	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620192_at	CA818412	-	-	4e+0	At5g17120	-	C.G.	S.X.	Please select
0.01	3e+0	32	1619768_at	CB003377	-	-	1e-7	At5g46210	CUL4 (CULLIN4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-5	52	Arabidopsis thaliana	At3g15970	820841	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	F:molecular_function unknown;P:intracellular transport;C:cellular_component unknown;MBOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-17	91	Glycine max	Gma.10328.1.S1_at	BE058328	-	-	3e+0	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please select
0.10	5e-9	61	Hordeum vulgare	Contig7730_at	Contig7730	-	-	8e-1	At4g26965	NADH:ubiquinone oxidoreductase family protein	C.G.	S.X.	Please select
0.04	3e-7	57	Oryza sativa	Os05g0349500	AK101703.1	-	RanBP1 domain containing protein	7e-2	At4g31440	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	3e-56	220	Populus trichocarpa	PtpAffx.69957.1.A1_at	CV238855	hypothetical protein	-	3e-2	At3g15970	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	5e-11	69	Triticum aestivum	Ta.9442.1.S1_at	CK194226	-	-	9e-1	At2g04520	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.03	7e-2	38	Zea mays	Zm.5908.1.A1_at	AW424447	hypothetical protein LOC100273971	-	2e-2	At1g11890	SEC22	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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